DN617346

Overview
NameDN617346
Unique NameDN617346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617346_ssr4 microsatellite DN617346_ssr4:4..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6236 contig Csv1_Contig6236:22..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 5.608e-57
Identity = 102/141 (72.34%), Postives = 109/141 (77.30%), Query Frame = 3
Query:  108 HANG--GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            H NG  GGGW+NA ATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+EI+C ND KWCLPG+I+VTATNFC          GGWCNPPQQHFDLSQPVFQ IAQYRAG+VPVAYRRVPC RRGGI
Sbjct:   18 HVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGI 158          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.605e-54
Identity = 96/135 (71.11%), Postives = 105/135 (77.78%), Query Frame = 3
Query:  120 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            GGGWINA ATFY              YGNLYSQGYGT+TAALSTALFNNGLSCGSC+EI+C ND KWCLPG+I+VTATNFC          GGWCNPP +HFDL+QPVFQ IAQYRAG+VPV+YRRVPC RRGGI
Sbjct:   23 GGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGI 157          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 9.265e-52
Identity = 93/133 (69.92%), Postives = 100/133 (75.19%), Query Frame = 3
Query:  126 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            GW+NA ATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+EIKC +D  WCLPG I+VTATNFC          GGWCNPP  HFDLSQPVFQ IAQY+AGVVPV+YRRVPC RRGGI
Sbjct:   29 GWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGI 161          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 8.672e-50
Identity = 88/133 (66.17%), Postives = 98/133 (73.68%), Query Frame = 3
Query:  126 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            GW+NARATFY              YGNLYSQGYGTNTAALSTALFN G SCG+C++IKCV+DPKWC+ GTI VT TNFC          GGWCNPPQ HFDL+QP+F  IAQY+AGVVPV YRRV C R+GGI
Sbjct:   28 GWVNARATFYGGADASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGI 160          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.133e-49
Identity = 86/137 (62.77%), Postives = 103/137 (75.18%), Query Frame = 3
Query:  120 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            GG WINA ATFY              YGNLYSQGYG NTAALSTALFNNGLSCGSC+E+KC+NDP WCLPG  +I++TATNFC          GGWCNPP++HFDL+ P+F  IA+Y+AG+VPV+YRR+PC ++GGI
Sbjct:   29 GGPWINAHATFYGEADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGI 165          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 5.621e-49
Identity = 87/137 (63.50%), Postives = 101/137 (73.72%), Query Frame = 3
Query:  120 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            GG W NA ATFY              YGNLYSQGYGTNTAALSTALFNNG+SCG+C+E+KC NDP+WC  G  +I++TATNFC          GGWCNPP++HFDL+ PVF  IAQYRAG+VPV+YRRVPC +RGGI
Sbjct:   28 GGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGI 164          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.808e-47
Identity = 84/134 (62.69%), Postives = 96/134 (71.64%), Query Frame = 3
Query:  123 GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            GGW    ATFY              YGNLY QGYGTNTAALSTALFNNGL+CG+CYE+KC +DP+WCL  TI VTATNFC          GGWCNPP QHFDL++P F  IAQYRAG+VPV++RRVPC ++GGI
Sbjct:   28 GGWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGI 161          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.172e-46
Identity = 84/137 (61.31%), Postives = 98/137 (71.53%), Query Frame = 3
Query:  120 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            GG W NA ATFY              YGNLYSQGYG NTAALSTALFNNG SCG+C+EIKC +DP+WC+PG  +I+VTATNFC          GGWCNPP++HFDL+ P+F  I  YRAG+VPV+YRRVPC + GGI
Sbjct:   33 GGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGI 169          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.999e-46
Identity = 84/137 (61.31%), Postives = 97/137 (70.80%), Query Frame = 3
Query:  120 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            GG W  A ATFY              YGNLYSQGYGTNTAALST+LFN+G SCG+C+EIKCVNDPKWC PG  ++ VTATNFC          GGWCNPP+ HFDL+ PVF  IA+YRAG+VP++YRRV C + GGI
Sbjct:   31 GGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGI 167          
BLAST of DN617346 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 2.611e-46
Identity = 83/137 (60.58%), Postives = 97/137 (70.80%), Query Frame = 3
Query:  120 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYRRVPCGRRGGI 524
            GGGW  A ATFY              YGNLYSQGYG NTAALSTALFNNG SCG+C+E+KC +DPKWC  G  +I +TATNFC          GGWCNPP+ HFDL+ P+F  IA+YRAG+VPV++RRVPC +RGGI
Sbjct:   28 GGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGI 164          
The following BLAST results are available for this feature:
BLAST of DN617346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
EXPA1_ARATH5.608e-5772.34Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP10_ARATH2.605e-5471.11Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXP15_ARATH9.265e-5269.92Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP14_ARATH8.672e-5066.17Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA9_ARATH1.133e-4962.77Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA4_ARATH5.621e-4963.50Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA8_ARATH1.808e-4762.69Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA3_ARATH1.172e-4661.31Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXP16_ARATH1.999e-4661.31Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA6_ARATH2.611e-4660.58Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617346 ID=DN617346; Name=DN617346; organism=Citrus sinensis; type=EST; length=524bp
TTCCTCTCTCTCTTTCTCTACTCTGCTTCTGGGCTTCCAATTTCTCCAAG
AAAATGTATTTTGCTGGGTTTTTCTCGTTGGGTTTCCTTGCATTGGTGTC
CTCCGTTCATGCTAATGGAGGCGGTGGGTGGATTAATGCTCGTGCCACTT
TCTATGGTGGTGGCGATGCTTCAGGGACTATGGGTGGGGCTTGTGGCTAT
GGGAATCTGTATAGCCAGGGTTATGGAACGAACACTGCAGCCTTGAGCAC
GGCTTTGTTCAACAACGGTTTGAGCTGTGGGTCTTGCTATGAGATTAAGT
GTGTTAATGACCCCAAATGGTGCCTGCCCGGCACCATTATGGTCACAGCT
ACCAATTTTTGCCCACCGAACAACGCCCTTCCCAACAATGCAGGCGGTTG
GTGCAATCCTCCGCAGCAACATTTTGATCTCTCTCAGCCTGTGTTCCAAC
ACATTGCTCAATACAGAGCTGGAGTTGTCCCTGTAGCTTACAGGAGGGTA
CCCTGCGGAAGAAGGGGAGGCATC
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