DN617345

Overview
NameDN617345
Unique NameDN617345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617345_ssr354 microsatellite DN617345_ssr354:354..371. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10454 contig Csv1_Contig10454:683..1287. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617345 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.796e-13
Identity = 32/43 (74.42%), Postives = 40/43 (93.02%), Query Frame = -3 
Query:  475 NTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 603
            N+YLNGQ+LSF+VTTSDGRTV S+N APAGWS+G+T++G QFR
Sbjct:  207 NSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR 249
[Close]
BLAST of DN617345 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = -3 
Query:  475 NTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 603
            N+YLNGQSLSF+VTTSDG+T+ S NVA AGWSFG+T++GAQ R
Sbjct:  208 NSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQLR 250
[Close]
BLAST of DN617345 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.546e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = -3 
Query:  475 NTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 603
            N+YLNGQSLSF VTTSD R+V S+NVAP  WSFG+TY+G QFR
Sbjct:  212 NSYLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFR 254
[Close]
BLAST of DN617345 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = -3 
Query:  478 NTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQF 603
            N+YL+GQSLSF+V  SDGRTVTS NV PAGW FG+T+ G QF
Sbjct:  210 NSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEGGQF 251
[Close]
BLAST of DN617345 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.745e-11
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = -3 
Query:  475 NTYLNGQSLSFEVTTSDGRTVTSYNVAPAGWSFGRTYSGAQFR 603
            N  LNGQ+LSF+VT SDGRTV S N+APA WSFG+T++G QFR
Sbjct:  211 NNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253
The following BLAST results are available for this feature:
BLAST of DN617345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
EXP10_ARATH1.796e-1374.42Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA1_ARATH3.387e-1274.42Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXPA5_ARATH7.546e-1274.42Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA2_ORYSJ2.195e-1171.43Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP15_ARATH3.745e-1169.77Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01B09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617345 ID=DN617345; Name=DN617345; organism=Citrus sinensis; type=EST; length=605bp
ACGACATAATATATACTCAGCCAAATCTCGCTGATTACAATTAAACTTGC
ACGCCAAAAAGTGCTTCTGGGCAAGCAATTCCAAGAAGCATCAAAAAAAG
AAGCAGCTATCTCAAGCACAAATGGCGGGTGGAAAAATTTCCACCTCAGC
CATCTGTTGCACTTCAACAGAAACCCCCAAAAAGAAAGGTAAAAAAAGGA
TCCCCAAGATAATAAGAGGATCCCATAATTAGACACCCCACGCAACCATA
AAAATCAATTGAAAATGAAAAAAATAAGCCATTTTAAAATAAGCCCTTTT
TTTTCATTTTTGACCCTGGAAGCCAAAAACTAGCCACATAGCTACTTCTA
TATTATATATATATATATATACCCTAGTATGCTAAAATTTCATACTAAAA
TATACTACTTAGTACACGAATATATAGCTAAAAAAGGTGTTAAAACCCAA
TCTCTAATGGTCTTGGTGGCTCTAGCGGAATTGAGCACCGGAGTAAGTTC
GGCCAAAGGACCAGCCAGCAGGGGCAACATTGTAGGAAGTCACAGTACGG
CCATCGCTTGTGGTGACCTCAAATGACAGGCTTTGGCCATTGAGATAAGT
GTTGC
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