DN617341

Overview
NameDN617341
Unique NameDN617341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617341_ssr81 microsatellite DN617341_ssr81:81..92. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6287 contig Csv1_Contig6287:1307..1867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.488e-45
Identity = 80/111 (72.07%), Postives = 96/111 (86.49%), Query Frame = -2
Query:  228 QKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 560
            Q QTKE++++YINELCD +P+PMG+S +DCG++ +MP VSFTIG KIF+L+PE+YILK GEG    CISGF AFD+PPPRGPLWILGDVFMG YHTVFD GKLR+G AEAA
Sbjct:  403 QNQTKERIINYINELCDRMPSPMGQSAVDCGQLSSMPTVSFTIGGKIFDLAPEEYILKVGEGPVAQCISGFTAFDIPPPRGPLWILGDVFMGRYHTVFDFGKLRVGSAEAA 513          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 3.478e-42
Identity = 75/111 (67.57%), Postives = 92/111 (82.88%), Query Frame = -2
Query:  228 QKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 560
            Q +T++ +L+YIN+LCD LP+PMGES +DCG + +MP +SFTIG K F L PE+YILK GEG A  CISGF A D+PPPRGPLWILGDVFMG YHTVFD GK+R+GFA++A
Sbjct:  399 QNKTQDLILNYINQLCDKLPSPMGESSVDCGSLASMPEISFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGAYHTVFDYGKMRVGFAKSA 509          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.255e-41
Identity = 75/111 (67.57%), Postives = 91/111 (81.98%), Query Frame = -2
Query:  228 QKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 560
            Q +T++ +L Y+N+LC+ LP+PMGES +DCG + +MP++ FTIG K F L PE+YILK GEG A  CISGF A D+PPPRGPLWILGDVFMG YHTVFD GKLRIGFA+AA
Sbjct:  398 QNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 508          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 6.560e-41
Identity = 71/111 (63.96%), Postives = 90/111 (81.08%), Query Frame = -2
Query:  228 QKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 560
            Q +T+E +++Y+++LC+ LP+PMGES +DC  + +MPN++FT+G K FNLSPEQY+LK GEG    CISGF A D+ PP GPLWILGDVFMG YHTVFD G LR+GFAEAA
Sbjct:  363 QNETEENIINYVDKLCERLPSPMGESAVDCSSLSSMPNIAFTVGGKTFNLSPEQYVLKVGEGATAQCISGFTAMDVAPPHGPLWILGDVFMGQYHTVFDYGNLRVGFAEAA 473          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.786e-38
Identity = 72/111 (64.86%), Postives = 90/111 (81.08%), Query Frame = -2
Query:  228 QKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 560
            + +TKE +L+Y N+LC+ LP+P GES + C +I  MPN++FTI +K F L+PEQYI+K  +G   VCISGFMAFD+PPPRGPLWILGDVFMG YHTVFD GK RIGFA++A
Sbjct:  386 ENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSA 496          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.864e-25
Identity = 47/93 (50.54%), Postives = 69/93 (74.19%), Query Frame = -2
Query:  231 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 509
            ++P   GE +IDC ++PT+P +SF +G K ++L+ EQY+LK  +G   +C+SG M  ++PPP GPLWILGDVF+G Y+TVFD    R+GFA++
Sbjct:  303 AIPLIQGEYMIDCKKVPTLPTISFNVGGKTYSLTGEQYVLKESQGGKTICLSGLMGLEIPPPAGPLWILGDVFIGQYYTVFDRESNRVGFAKS 395          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 9.517e-24
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = -2
Query:  231 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 509
            + P   GE +++C  +P++P +SFT+G +++ L+ EQYILK  +    +C+SGFM  D+P P GPLWILGDVFMG Y+TVFD    R+GFA+A
Sbjct:  303 AFPLIQGEYMVNCDTVPSLPVISFTVGGQVYTLTGEQYILKVTQAGKTMCLSGFMGLDIPAPAGPLWILGDVFMGQYYTVFDRDANRVGFAKA 395          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.623e-23
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = -2
Query:  231 INELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 527
            IN+     P   GE ++DC  IP +P +SF +G K F+L    Y+L+  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+T FD G  R+GFA A
Sbjct:  288 INKAIGGTPIMNGEYMVDCSLIPKLPKISFVLGGKSFDLEGADYVLRVAQMGKTICLSGFMGIDIPPPNGPLWILGDVFIGKYYTEFDMGNDRVGFATA 386          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.769e-23
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  228 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 509
            ++P   GE +I C ++ T+P ++  +G K + LSPE Y LK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFAEAA
Sbjct:  317 AVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 410          
BLAST of DN617341 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.616e-23
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  228 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 509
            ++P   GE +I C ++P++P+V+ T+G K + LS E Y LK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+G AEAA
Sbjct:  252 AVPLIQGEYMIPCEKVPSLPDVTVTLGGKKYKLSSENYTLKVSQAGQTICLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDLNRVGLAEAA 345          
The following BLAST results are available for this feature:
BLAST of DN617341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
ASPR_CUCPE7.488e-4572.07Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPR1_ORYSJ3.478e-4267.57Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
ASPR_HORVU2.255e-4167.57Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
CYPR1_CYNCA6.560e-4163.96Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
ASPRX_ORYSJ1.786e-3864.86Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
CATD_CLUHA3.864e-2550.54Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATD_CHIHA9.517e-2450.54Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
ASPP_AEDAE1.623e-2348.48Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
CATD_HUMAN2.769e-2351.06Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATD_PIG3.616e-2351.06Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617341 ID=DN617341; Name=DN617341; organism=Citrus sinensis; type=EST; length=561bp
AGAATATCATAAAATTCGAAGTACTTTAAACATAGGATGATAGGATTTTA
CATAAGTATATATCAGCATATCATCTGTGGTGATGATGATGATAGTTATG
CATAAAAGCATACTGATCGTTTTACAGTACATGAAAACCATAATCTACAT
TCTACAACCCTCCTCCTCATATGAGCAGGTGATGATCGCTGCTACTACAT
AAAAACTTGACAGTAAGTAGATCATTACGCAGCCTCAGCAAAGCCGATCC
GGAGCTTACCAGAGTCGAAAACAGTGTGATAAACCCCCATGAATACATCT
CCCAGAATCCACAGAGGACCCCTTGGAGGAGGCAGGTCGAAAGCCATGAA
GCCACTGATGCAGACTTCTGCAATCCCTTCTCCGGTTTTCAGAATATACT
GCTCTGGAGAGAGGTTGAAAATTTTGTCTCCGATGGTGAATGAAACATTT
GGCATGGTTGGAATGCGACCACAGTCAATAATTGATTCTCCCATCGGATT
TGGCAGGCTGTCGCAGAGCTCATTTATATAACTGAGTACTTTCTCCTTTG
TTTGCTTTTGT
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