DN617339

Overview
NameDN617339
Unique NameDN617339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2797 contig Csv1_Contig2797:452..1042. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.272e-49
Identity = 99/131 (75.57%), Postives = 104/131 (79.39%), Query Frame = -2
Query:  198 FVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 590
            F  +YGGGKAATA AN LNKEFG KLKE MQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+TGT+MRRKMWLQNM                  LSVCHGF C
Sbjct:   89 FNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHGFKC 219          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 9.521e-49
Identity = 98/133 (73.68%), Postives = 104/133 (78.20%), Query Frame = -2
Query:  192 FVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNCGK 590
            F  +YGGGKAATA AN LNKEFG KLKE MQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GT+MRRKMW QNM                  LS+C GFNCGK
Sbjct:   89 FNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIALILIIILSICGGFNCGK 221          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.164e-46
Identity = 93/131 (70.99%), Postives = 101/131 (77.10%), Query Frame = -2
Query:  198 FVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 590
            F  +YGGGKA+TA AN LNKEFG KLKE MQYC DHPEEISKL+KVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GTKM+RK+W +NM                  LSVCHGF C
Sbjct:   89 FNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVALILIIILSVCHGFKC 219          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 9.852e-46
Identity = 93/131 (70.99%), Postives = 100/131 (76.34%), Query Frame = -2
Query:  198 FVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 590
            F  +YGGGKA TA AN LN+EFG KLKE MQYCVDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GTK+RRKMW +NM                  LSVC GF C
Sbjct:  154 FNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIITLILIIILSVCGGFKC 284          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 9.875e-38
Identity = 75/131 (57.25%), Postives = 91/131 (69.47%), Query Frame = -2
Query:  198 FVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 590
            F  +YGGGKA+TA A  LNKEFGP +KE M Y VDH EEI KL KVKAQVSEVK +M+ENI+K +DRGE + +L DKTENL  QAQ+++  GT++RRK+W QNM                  +SVCHGFNC
Sbjct:   90 FKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLLLVLIIWISVCHGFNC 220          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.097e-32
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  198 ANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 548
            A  L++EFGP LKE MQYC+ HPEE+SKL+K+KAQ++EVKG+MM+NIEKVLDRGEKIELLVDKTENL  QA  F+  G ++RRKMWLQ++                  +  C GF C
Sbjct:  122 AYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKC 238          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.527e-30
Identity = 74/133 (55.64%), Postives = 82/133 (61.65%), Query Frame = -2
Query:  192 FVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNCGK 590
            F  +YGG KAAT  AN LNKEFG  LKE MQYC+DHP+EIS LAK KAQVSEVK +MMENIEKVL RG   E+L     +   Q Q F    T+M+RK W QNM                  LSVC GFNCGK
Sbjct:   89 FYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML----GSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK 217          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.229e-16
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = -2
Query:  282 FVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 590
            F+  YG   A  APA  +N EF   L + M++   +P  +  L +V+ +VSE++ VM+ENIEK+++RG++IELLVDKT  +   +  FR    ++RR +W++N
Sbjct:   88 FMKNYGK-VAHNAPAYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKN 188          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.388e-15
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = -2
Query:  207 FVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHG 590
            FV  YG     +A A  +N EF   L + M++  + P    +++++K ++S+V+ VM+ENI+KVLDRGE++ELLVDKTEN+      FR    + R  MW +N+                    VCHG
Sbjct:   88 FVKTYGRA-IHSAQAYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTIALILVLALVVYIAMAFVCHG 213          
BLAST of DN617339 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.534e-14
Identity = 44/128 (34.38%), Postives = 67/128 (52.34%), Query Frame = -2
Query:  207 FVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHG 590
            FV  YG     TA A  +N+EF   L + + Y  + P    ++ ++K ++++V+GVM+ENI+KVLDRGE++ELLVDKT N+      FR    + R  +W +N                     +CHG
Sbjct:   87 FVRTYGRA-VHTALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLLVIIYIAVAFLCHG 212          
The following BLAST results are available for this feature:
BLAST of DN617339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA721_ARATH3.272e-4975.57Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA722_ARATH9.521e-4973.68Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA726_ARATH1.164e-4670.99Putative vesicle-associated membrane protein 726 O... [more]
VA725_ARATH9.852e-4670.99Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA724_ARATH9.875e-3857.25Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA727_ARATH8.097e-3257.26Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA723_ARATH1.527e-3055.64Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA714_ARATH6.229e-1639.81Vesicle-associated membrane protein 714 OS=Arabido... [more]
VA713_ARATH1.388e-1535.94Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA711_ARATH1.534e-1434.38Vesicle-associated membrane protein 711 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B06_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617339 ID=DN617339; Name=DN617339; organism=Citrus sinensis; type=EST; length=591bp
TATAATTGACGGGACTCATTCACAAGCAAAAATAAGTTTTCGGTTTTCTT
TGTAACAAATATAGGGAAACTGCTAACTTTTTTAGACTAAATACAAAGTC
AAGATCATATATATTTATATATCTCTTTCACAATATCATCACAGAAGCTC
TTAGAAGAGCGTAATATAAGCCTCCTGGAGAATAGCACTCATTTTCCGCA
GTTGAAACCATGGCAAACAGAGAGGACTATGATGAGGATCAAGGCAATCA
GTATTCCCAAAACAATCAGCTTGATCTTCATATTTTGCAGCCACATTTTC
CTCCGCATTTTGGTCCCCGTACTCCGAAAGTCTTGTGCCTGCTGATGAAG
GTTCTCAGTCTTATCGACCAGTAGCTCAATCTTTTCCCCCCTATCTAAAA
CCTTTTCAATATTCTCCATCATAACACCTTTGACTTCTGAAACCTGAGCC
TTAACCTTCGCAAGCTTGCTGATCTCCTCAGGATGATCAACACAGTACTG
CATAAGTTCTTTCAATTTTGGTCCAAATTCCTTGTTCAGGCCATTGGCAG
GAGCCGTGGCAGCCTTTCCACCCCCATATTTGGAAACAAAT
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