DN617336

Overview
NameDN617336
Unique NameDN617336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617336_ssr95 microsatellite DN617336_ssr95:95..106. BLAST: Citrus ESTs to Prunus persica proteins V1
DN617336_ssr107 microsatellite DN617336_ssr107:107..118. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5713 contig Csv1_Contig5713:1..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617336 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.929e-37
Identity = 75/141 (53.19%), Postives = 97/141 (68.79%), Query Frame = 2
Query:  179 KNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIRPGAKPPACDQLRNG--CESATWSQLMPLYFAFGLMSLGSGGIR 595
            K  KGG+ T+PFIIANEAFE++A+ G  PNMI+YL R+Y       TN++F+W+AA+NF P++GA L+DSY+GR+  I     +  LGMVLLW T + P  KP  CD    G  C S+T SQL  LY AF L+S+GSGGIR
Sbjct:   19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIR 159          
BLAST of DN617336 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.716e-16
Identity = 44/142 (30.99%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  173 INKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIRPGAKPPACDQLR-NGCESATWSQLMPLYFAFGLMSLGSGGIR 595
            + ++  G  +   F++  E FERMA  G + N+++Y+  + +  T  ++N +  W   +   PI+GA +AD++ GRY          LLGM LL  +   PG KPP C       CE A+  QL   + A   +++G+GG +
Sbjct:   23 VRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTK 164          
BLAST of DN617336 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16
Identity = 45/143 (31.47%), Postives = 77/143 (53.85%), Query Frame = 2
Query:  176 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIRPGAKPPACDQLRNG-CESATWSQLMPLYFAFGLMSLGSGGIRSS 601
            +++  GG  +   I+  EA ER+ T+G   N++ YL    ++    A N +  +   +  L ++G  +AD+++GRY  I         G+ +L  +TI PG +PP C+   +  CE A+  QL  LY A  L +LG+GG+++S
Sbjct:   24 DRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKAS 166          
BLAST of DN617336 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.898e-15
Identity = 41/142 (28.87%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  173 INKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIRPGAKPPACDQLR-NGCESATWSQLMPLYFAFGLMSLGSGGIR 595
            + ++ +G  +   F++  E FERMA  G + N+ +Y+  + +  T  ++N +  W   +   PI+GA + D+ +GRY      C     GM++L  +   PG KPP C       CE A+  QL   + A   +++G+GG +
Sbjct:   23 VRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTK 164          
BLAST of DN617336 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.227e-15
Identity = 47/140 (33.57%), Postives = 72/140 (51.43%), Query Frame = 2
Query:  176 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIRPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIR 595
            NKN  G  +   FI+  E  ER+A  G + N+I YL ++ NME  +A+  +  W+      P++GA +AD+Y+GRY  I       + GM LL  +   PG  P    +  +    AT  Q    + A  L++LG+GGI+
Sbjct:   22 NKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGETCH----ATAGQTAITFIALYLIALGTGGIK 157          
BLAST of DN617336 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.521e-15
Identity = 47/140 (33.57%), Postives = 70/140 (50.00%), Query Frame = 2
Query:  176 NKNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTIRPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIR 595
            NK   G  +   FI+ NE  ER+A  G   N++ YL    N     A N +  W+      P++GA +AD+Y+GRY  I    F  + GM LL  +   PG KP  C+   + C   + SQ    + A  +++LG+GGI+
Sbjct:   21 NKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCN--ADTCHPNS-SQTAVFFVALYMIALGTGGIK 157          
BLAST of DN617336 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 2
Query:  179 KNPKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL--LGMVLLWSTTIRPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIR 595
            K   G  +  PFI+ NE  ER+A  G   N+I YL  + +    +A   +  W       P++GA+LAD+Y GRY  I   CF+ +  +GM  L  +   P  KP  C  + + C SAT +Q    +    L++LG+GGI+
Sbjct:   39 KEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTI--ACFSGIYFIGMSALTLSASVPALKPAEC--IGDFCPSATPAQYAMFFGGLYLIALGTGGIK 175          
The following BLAST results are available for this feature:
BLAST of DN617336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PTR2X_ARATH3.929e-3753.19Probable peptide transporter At1g52190 OS=Arabidop... [more]
PTR3B_ARATH1.716e-1630.99Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
CHL1_ARATH8.518e-1631.47Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PTR3A_ARATH1.898e-1528.87Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR5_ARATH4.227e-1533.57Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR1_ARATH5.521e-1533.57Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR2_ARATH9.417e-1534.04Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01B04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617336 ID=DN617336; Name=DN617336; organism=Citrus sinensis; type=EST; length=603bp
CAGACTGACTATCATTTTCAGAATAAATTAATATCTACCTACTAGACCTA
GATATGAATTAATTGTCACGGCAGATTATCTCTGCTCCCTACTCAGAAAG
AAAGAAAAGAAAGAAAGAAAGGAACTTGCAAGCAAATCAAAGAGCAGCAA
CATGATCACAGAACCACTCTTGATCAACAAGAACCCAAAGGGTGGCCTCA
GAACCTTGCCTTTCATCATTGCAAATGAAGCATTTGAGAGGATGGCGACT
GTTGGGTTCACGCCAAACATGATACTCTACCTCTGCAGAGAATACAACAT
GGAAACAACTGCAGCAACGAACATAATCTTCATCTGGACGGCTGCTACCA
ATTTTCTGCCGATTGTTGGCGCATTGCTTGCCGATTCTTACGTCGGACGC
TACCGGATGATCGGCTTCGGTTGCTTCACTTGCCTTTTGGGGATGGTTTT
GCTATGGTCGACTACAATTCGACCCGGGGCGAAGCCTCCAGCTTGTGACC
AACTAAGAAACGGTTGTGAATCCGCTACATGGTCTCAATTGATGCCCTTG
TATTTTGCTTTTGGCCTCATGTCACTCGGAAGCGGGGGCATACGGTCTTC
CTC
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