DN617335

Overview
NameDN617335
Unique NameDN617335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5712 contig Csv1_Contig5712:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617335 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.771e-22
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = -3
Query:  231 PYLVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRV 557
            P  VL GLA A   IGQTEF+YTE PKSM                    +++NAV+++T R G   W+  NINKGHY+YYYW+L  +S  N +YY+ C  +YGP   +V
Sbjct:  465 PQYVLHGLAEALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYWVLAIMSFINVIYYVICSWSYGPLVDQV 573          
BLAST of DN617335 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 43/112 (38.39%), Postives = 57/112 (50.89%), Query Frame = -3
Query:  222 PYLVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFKGRVGTA 557
            P  +L G A  F  IGQ EF+Y + P +M                    +++  V  ITK+ G  GWIP N+N+GH DY+++LL  LS  NFL YL   K Y  +K  VG A
Sbjct:  459 PQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRY-KYKKAVGRA 569          
BLAST of DN617335 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.028e-14
Identity = 38/102 (37.25%), Postives = 48/102 (47.06%), Query Frame = -3
Query:  252 PYLVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 557
            P   L G A  F  IGQ EF+Y + P +M                     ++  V  +T+ GG  GWI  N+N GH DY++WLL  LS  NFL YL   K Y
Sbjct:  459 PQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWY 560          
BLAST of DN617335 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 35/102 (34.31%), Postives = 44/102 (43.14%), Query Frame = -3
Query:  252 PYLVLSGLAMAFNMIGQTEFYYTELPKSMXXXXXXXXXXXXXXXXXXXXLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAY 557
            P   + G A  F  IGQ EF+Y + P +M                    LI+  V   T R G  GWI  N+N GH DY++WLL  LS+ N   Y      Y
Sbjct:  477 PQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARY 578          
The following BLAST results are available for this feature:
BLAST of DN617335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PTR2X_ARATH1.771e-2244.04Probable peptide transporter At1g52190 OS=Arabidop... [more]
PTR1_ARATH2.739e-1538.39Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH3.028e-1437.25Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR2_ARATH2.399e-1134.31Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01B04_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617335 ID=DN617335; Name=DN617335; organism=Citrus sinensis; type=EST; length=559bp
TTTTTAAATTACAATATGAGCAGAATTTCTATTAGGAAAGATGAAGATGA
GTATACTATTACAAACCATCAAAGCGCTGGTCCTATAGTGCATTTGACGT
ACTTGCTATTACTTAAAAAGAGTTCTCAGAGTCCTAGTTATGTGCATGCT
ACAAACAATTTTAGACTTTGTGGAGAAATGGGGAACTAACATTCCTCCTC
CATGCCGTCCTTATCATCGAACGCAGTACCGACTCGTCCTTTAAAAGGAC
CATAAGCCTTGCAGCAAGCAAGATAATATAAAAAATTAGCCATGCTCAAA
GCTGTGAGAAGCCAGTAATAGTAATCATAATGACCCTTGTTGATATTACT
AGGAATCCAGCCTCCATTTCCTCCTCTTTTGGTAATATCATCGACTGCAT
TCATGATCAAACTCGCTACCAAGTTTGCCGCTGACAACCCCGCTCCCGAA
AGCGTGGAGGCTATGCTAGACATGCTTTTAGGCAACTCGGTGTAGTAGAA
CTCCGTCTGCCCAATCATGTTGAAAGCCATGGCCAAGCCGCTGAGCACGA
GATAAGGTA
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