DN617330

Overview
NameDN617330
Unique NameDN617330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617330_ssr54 microsatellite DN617330_ssr54:54..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5711 contig Csv1_Contig5711:1..412. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617330 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.265e-34
Identity = 70/104 (67.31%), Postives = 86/104 (82.69%), Query Frame = 3
Query:   99 NMDIEEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAA 410
            +M  EE++RLKYL+FVQ A +  LL F  +Y  AK KSGPLKPGVESVEG VK VVGPVY+KYH +P+E+LK++D+KVD SVT+LD RVPPV+KQV AQA+SAA
Sbjct:   13 DMTKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAA 116          
BLAST of DN617330 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.250e-30
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 3
Query:   75 EKNVPSQQNMDIE---EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAA 410
            E+ V  ++  ++E   EE+RL+YLEFVQ A   VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P++LLKF+DRKV ESV +LD RVPPV+K+ P  A SAA
Sbjct:   15 EEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAA 129          
BLAST of DN617330 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.250e-30
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 3
Query:   75 EKNVPSQQNMDIE---EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAA 410
            E+ V  ++  ++E   EE+RL+YLEFVQ A   VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P++LLKF+DRKV ESV +LD RVPPV+K+ P  A SAA
Sbjct:   15 EEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAA 129          
BLAST of DN617330 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.457e-30
Identity = 58/99 (58.59%), Postives = 81/99 (81.82%), Query Frame = 3
Query:  114 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAA 410
            EE+RLKYL+FVQVA I+V++CF +LY YAK  SGPLKPGV++VEGTVK V+GPVY+K++ +P ELL F+DRKV+ S+ +L+  VP ++K+   QA++ A
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVA 114          
BLAST of DN617330 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.462e-22
Identity = 55/99 (55.56%), Postives = 70/99 (70.71%), Query Frame = 3
Query:  114 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAA 410
            EE+RLKYL+FV+ A ++ +  F  LY YAK  SGPLKPGV+++E  VK VV PVY     +P+E +KF+D+ VD SVT LD  VPPV+KQV AQ  S A
Sbjct:    6 EEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVY----YIPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVA 100          
BLAST of DN617330 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.557e-22
Identity = 46/100 (46.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:  111 EEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAA 410
            ++E +LK+LEF+QVA ++   CF  LY  AK  +GPLK GVE++E  V+ V+ P+Y+K+H +P +LL F+DRKVD+    ++  VP ++KQ  +QAL+ A
Sbjct:   36 DDEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVA 135          
BLAST of DN617330 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.159e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  114 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQA 398
            +E  LK+L FV++ATIH+L    NLY YAK  SGPLK  VE VEG V  VV PVY K+  +P  LL F+D KV E   K D   PP+ K+V  QA
Sbjct:    9 KEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQA 103          
BLAST of DN617330 vs. ExPASy Swiss-Prot
Match: REF_HEVBR (Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.673e-18
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = 3
Query:   66 MAEEKNVPSQQNMDIEEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSA 407
            MAE+++  +QQ     + + LKYL FVQ A  + +  F N+Y +AK KSGPL+PGV+ +EG VKNV  P+Y+++  +P   LKF+D  V  SVT +D  +PP++K    Q +SA
Sbjct:    1 MAEDED--NQQG----QGEGLKYLGFVQDAATYAVTTFSNVYLFAKDKSGPLQPGVDIIEGPVKNVAVPLYNRFSYIPNGALKFVDSTVVASVTIIDRSLPPIVKDASIQVVSA 108          
BLAST of DN617330 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.951e-16
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  186 LYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALS 404
            LY YAK ++GPLKPGV +VE  VK VV PVYD++H +P+ELLK+ DRKV E    LD  VP  +K+V +QA S
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHVPSNVKKVSSQARS 74          
The following BLAST results are available for this feature:
BLAST of DN617330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
Y3550_ARATH8.265e-3467.31REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
Y5513_ORYSJ3.250e-3057.39REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI3.250e-3057.39REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRP_VITRI9.457e-3058.59Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
SRPP_HEVBR1.462e-2255.56Small rubber particle protein OS=Hevea brasiliensi... [more]
Y2778_ARATH5.557e-2246.00REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
Y1736_ARATH1.159e-1952.63REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
REF_HEVBR1.673e-1843.86Rubber elongation factor protein OS=Hevea brasilie... [more]
SRP_PHAVU5.951e-1657.53Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01B01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617330 ID=DN617330; Name=DN617330; organism=Citrus sinensis; type=EST; length=412bp
CCTCGAACAAGTTAAAGGCTTCTTCTACGACGTCGTTTCACAGTCATTCG
TCAATCATCATCATCATGGCCGAAGAGAAGAACGTGCCGTCCCAACAAAA
CATGGATATTGAGGAGGAGCAGAGGCTGAAATATTTGGAGTTTGTGCAAG
TTGCCACAATCCATGTGTTGCTGTGCTTCCATAATCTATATGGTTATGCT
AAAGCCAAGTCCGGACCATTGAAACCTGGTGTGGAGTCCGTTGAGGGGAC
TGTCAAGAATGTGGTTGGACCTGTTTATGATAAGTATCATGGTCTCCCGA
TTGAGCTCCTTAAGTTTATTGATCGCAAGGTGGATGAGTCTGTGACCAAG
CTGGACTGCCGTGTGCCTCCAGTCCTCAAGCAAGTCCCTGCCCAAGCTCT
CTCCGCTGCTCA
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