DN617329

Overview
NameDN617329
Unique NameDN617329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig638 contig Csv1_Contig638:648..1135. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617329 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.485e-36
Identity = 73/108 (67.59%), Postives = 87/108 (80.56%), Query Frame = -1
Query:  162 AGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNGVVESQPL 485
            AGV  TASGMAKSVY+KYEPAAKELY+ YEPKAEQ AVSAW+KLNQ+PLF           A+CSEKYN TVV AA+KGY+V+SY+PLVPTERI+K+F+    E++PL
Sbjct:  133 AGVVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPL 240          
BLAST of DN617329 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.264e-27
Identity = 61/100 (61.00%), Postives = 72/100 (72.00%), Query Frame = -1
Query:  183 GVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNG 482
            GV  TA  + K+VY+K EP AKEL SKYEP AEQYAVSAWR LN++PLF           AY SEKYNQ+V   A++GY V+ YLPL+PTERIAKVF +G
Sbjct:  132 GVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQDG 231          
BLAST of DN617329 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.997e-24
Identity = 53/78 (67.95%), Postives = 63/78 (80.77%), Query Frame = -1
Query:  189 AKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFS 422
            AK +YSKYEP AEQ AVSAWRKLNQ+PLF           AYC+EKYN+ +VS+A+KGY+VS+YLPLVPTE+IAKVFS
Sbjct:   88 AKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVFS 165          
BLAST of DN617329 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 49/111 (44.14%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  153 AGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNGVVESQPLASA 485
            AG+ GTA+G+AKS   + EP A++LY++YEP AE+ A  AW  LN++PL            A  S +YN  V   A +G  V++YLPLVPTER+++VF        PLA A
Sbjct:  135 AGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF------GYPLADA 239          
BLAST of DN617329 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 49/111 (44.14%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  153 AGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNGVVESQPLASA 485
            AG+ GTA+G+AKS   + EP A++LY++YEP AE+ A  AW  LN++PL            A  S +YN  V   A +G  V++YLPLVPTER+++VF        PLA A
Sbjct:  135 AGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF------GYPLADA 239          
BLAST of DN617329 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.301e-18
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = -1
Query:  186 MAKSVY-TKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSN 458
            +A SV+ T  +  AK LY+  EPKAEQYAV  WR LN++PL             Y SEKYN  V    ++GY+VSSYLPL+PTE+I KVF +
Sbjct:  110 VASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPTEKITKVFGD 201          
BLAST of DN617329 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 38/96 (39.58%), Postives = 49/96 (51.04%), Query Frame = -1
Query:  195 GVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKV 482
            GV  T   +A+SV  KYEPA           AE YA + WR LNQ+PLF            Y SEKYN  V    D+ Y  + YLP++P E+I+ +
Sbjct:  142 GVVDTTKSIARSVRDKYEPA-----------AEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIPIEKISDI 226          
The following BLAST results are available for this feature:
BLAST of DN617329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y3550_ARATH3.485e-3667.59REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI2.264e-2761.00Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
SRP_PHAVU3.997e-2467.95Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
Y5513_ORYSJ8.625e-1944.14REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI8.625e-1944.14REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRPP_HEVBR7.301e-1850.00Small rubber particle protein OS=Hevea brasiliensi... [more]
Y2778_ARATH5.987e-1239.58REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01B01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617329 ID=DN617329; Name=DN617329; organism=Citrus sinensis; type=EST; length=488bp
TAAATAATCCGTAATCCACTCCATTTTCAACCCAATACACATCCAGAAAG
GGAAACATTTTCACTCCACAGCTTGCAAGAAAAATTGTGAGGCCAGAAAA
CAGAAAACAGAAAACACAGCTATCAATGCACAACAACATCAGCTTCATGT
CCAGCAGAAGCCAGAGGCTGCGATTCAACAACCCCGTTGCTGAACACCTT
AGCAATCCTCTCAGTAGGGACCAAAGGCAAATATGAGGAGACCTTGTACC
CCTTATCTGCAGCGCTCACCACTGTTTGGTTGTATTTTTCGGAACAATAG
GCAGCAGTTGGCACAACAACTTGAGCTACTTGAGGGAATAGTGGCATCTG
ATTGAGCTTGCGCCAAGCTGACACAGCATATTGCTCCGCTTTTGGTTCGT
ACTTGGAGTAAAGTTCCTTGGCTGCTGGCTCGTACTTGGTGTAAACGGAT
TTTGCCATTCCTGAGGCAGTGCCGGCTACACCGGCAGT
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