DN617328

Overview
NameDN617328
Unique NameDN617328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:23..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 343.969 bits (881), Expect = 4.966e-94
Identity = 170/197 (86.29%), Postives = 182/197 (92.39%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            DWYDIKAPS F  RNVGKTLVTRTQGTKIASEGLKHRVFEVSL DL N+E+H+YRKIRLRAEDVQGKNVLTNFWGM  TTDKLRSLV+KW +LIEA+VDVKTTDNFTLR+FCIGFTK+  NQVKRTCYAQ+SQI+QIRRKMREIMV QA +CDLK LV+KFI E IGREIEKATSSIYPLQNVFIRKVKILKAPKFD
Sbjct:   28 DWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 224
[Close]
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 343.584 bits (880), Expect = 6.486e-94
Identity = 170/197 (86.29%), Postives = 181/197 (91.88%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            DWYDIKAPS F VRN+GKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E+ AYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLV+KW TLIEA+VDVKTTD + LRLFCIGFTKR PNQVKRTCYAQ SQIRQIRRKM EIM  QA+SCDLK LV KFI EVIG+EIEKATSSI+PLQNVF+RKVKILKAPKFD
Sbjct:   28 DWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFD 224
[Close]
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.106e-93
Identity = 170/197 (86.29%), Postives = 181/197 (91.88%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            DWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKHRVFE+SL DL N+E+HAYRKIRLRAEDVQGKNVLTNFWGM FTTDKLRSLVRKW TLIEA+VDVKTTDN+TLR+FCI FTK+  NQ K+T YAQ+SQIRQIRRKMREIM  QAASCDLK LV KFI E+IGREIEKATSSIYPLQNVFIRKVKILKAPKFD
Sbjct:   28 DWYDIKAPSIFSVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIAFTKKRQNQNKKTSYAQSSQIRQIRRKMREIMTTQAASCDLKELVRKFIPEMIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 224
[Close]
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 5.491e-93
Identity = 168/197 (85.28%), Postives = 184/197 (93.40%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            DWYDIKAPS F+V+NVGKTLV+RTQGTKIASEGLKHRVFE+SL DL  +E++A+RKIRLRAEDVQGKNVLTNF+GM FTTDKLRSLVRKW TLIEA+VDVKTTDN+TLR+FCIGFTKR  NQVKRTCYAQ+SQIRQIRRKMREIMV QA SCDLK LV KFI E+IG+EIEKATSSIYPLQNVFIRKVKILK+PKFD
Sbjct:   28 DWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFD 224
[Close]
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 340.117 bits (871), Expect = 7.171e-93
Identity = 167/197 (84.77%), Postives = 182/197 (92.39%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            DWYDIKAPS F VRNVGKTLVTRTQGTKIASEGL+HRVFE+SL DL  +E+H++RKIRLRAED+QGKNVLTNFWGM FTTDKLRSLVRKW +LIEA+VDVKTTD++TLR+FCIGFTK+  NQ KRTCYAQ+SQIRQIRRKMREIMV QA SCDLK LV+KFI E IGREIEKATSSIYPLQNVFIRKVKILKAPKFD
Sbjct:   28 DWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 224
[Close]
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 5.139e-91
Identity = 166/197 (84.26%), Postives = 178/197 (90.36%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            DWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKHRVFE+SL DL  +E+ AYRKIRLRAEDVQG+NVLTNFWGM FTTDKLRSLVRKW TLIEA+VDVKTTDN+TLRLFCI FTK+  NQ K+TCYAQ+SQIRQIRRKMREIM   A SCDLK LV+KFI E IGREIEKATSSIYPLQNV+IRKVKILKAPKFD
Sbjct:   28 DWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFD 224
[Close]
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 330.487 bits (846), Expect = 5.682e-90
Identity = 163/197 (82.74%), Postives = 176/197 (89.34%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            DWYD+KAP  F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E++AYRKIRLRAEDVQG+NVLT FWGM FTTDKLRSLV+KW TLIEA+VDVKTTD +TLR+FCI FTKR  NQVKRTCYAQ+SQIRQIRRKM EIMV +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFD
Sbjct:   28 DWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFD 224
[Close]
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 9.692e-90
Identity = 163/197 (82.74%), Postives = 179/197 (90.86%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            DWYDIKAPS F ++NVGKTLVTRTQGTKIASEGLKHRVFEVSL DL  +E+ ++RKIRLRAEDVQGKNVLTNFWGM FTTDKLRSLV+KW TLIEA+VDVKTTD++TLR+FCI FTK+ PNQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCDLK LV KFI E IGREIEKATSSI+PLQNV+IRKVKILKAPKFD
Sbjct:   28 DWYDIKAPSVFDIKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQKDEDQSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFD 224
[Close]
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3)

HSP 1 Score: 329.717 bits (844), Expect = 9.692e-90
Identity = 163/197 (82.74%), Postives = 177/197 (89.85%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            DWYD+KAPS F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL  +E++AYRKIRLRAEDVQG+NVL  FWGM FTTDKLRSLV+KW TLIEA+VDVKTTD++TLRLFCI FTKR  NQVKRTCYAQ+SQIRQIRRKMR+IMV +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFD
Sbjct:   28 DWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFD 224
[Close]
BLAST of DN617328 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.118e-88
Identity = 163/197 (82.74%), Postives = 178/197 (90.36%), Query Frame = 1 
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFD 726
            DWYDIKAP+ F+ +NVGKTLV+RTQGTKIASEGLKHRVFEV L DL  +E+ AYRKIRLRAEDVQGKNVLTNF+GM FTTDKLRSLVRKW TLIEA+VDVKTTD++TLR+FCIGFTK+  NQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCDLK LV KFI E IGREIEKATSSI+PLQNVFIRKVKILKAPKFD
Sbjct:   28 DWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEGLKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFD 224
The following BLAST results are available for this feature:
BLAST of DN617328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
RS3A_HELAN4.966e-9486.2940S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A_ORYSJ6.486e-9486.2940S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]
RS3A2_VITVI1.106e-9386.2940S ribosomal protein S3a-2 OS=Vitis vinifera GN=G... [more]
RS3A_CICAR5.491e-9385.2840S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]
RS3A_CATRO7.171e-9384.7740S ribosomal protein S3a OS=Catharanthus roseus G... [more]
RS3A1_VITVI5.139e-9184.2640S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A2_ARATH5.682e-9082.7440S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A_TOBAC9.692e-9082.7440S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A1_ARATH9.692e-9082.7440S ribosomal protein S3a-1 OS=Arabidopsis thalian... [more]
RS3A_DAUCA3.118e-8882.7440S ribosomal protein S3a OS=Daucus carota GN=cyc0... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617328 ID=DN617328; Name=DN617328; organism=Citrus sinensis; type=EST; length=728bp
CGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAGCTGCAC
AAACATGGCCGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAGGAG
GCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGATATC
AAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTAC
CCGGACTCAGGGTACCAAGATTGCATCAGAAGGACTCAAACACAGAGTGT
TTGAGGTATCACTAGGTGATCTTCTCAACGAAGAAGAGCACGCTTACAGG
AAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTGTTGACTAA
CTTCTGGGGCATGAGTTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGA
AGTGGCATACCTTGATTGAAGCTTATGTGGATGTCAAGACCACTGATAAC
TTCACATTGAGATTGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCA
GGTTAAGAGGACTTGCTATGCACAGACCAGCCAGATTAGACAGATTCGCC
GCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCTTGTGATCTTAAG
AGCTTGGTCGAAAAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAA
GGCAACCTCAAGCATATATCCCTTACAAAATGTGTTCATTCGCAAAGTGA
AGATCCTGAAAGCTCCCAAGTTTGATCT
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