DN617323

Overview
NameDN617323
Unique NameDN617323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: AB25B_ARATH (ABC transporter B family member 25, mitochondrial OS=Arabidopsis thaliana GN=ABCB25 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 6.645e-48
Identity = 93/111 (83.78%), Postives = 104/111 (93.69%), Query Frame = -2
Query:  153 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAAVKL 485
            SGGEKQRVALAR FLK+P ILLCDEATSALDSTTEAEILNALK+LA+NRTSIFIAHRLTTAMQCDEI+VLENGKV+EQG HD+LL K+GRYAQLW QQN++ D +DAA+KL
Sbjct:  617 SGGEKQRVALARTFLKSPAILLCDEATSALDSTTEAEILNALKALASNRTSIFIAHRLTTAMQCDEIVVLENGKVVEQGPHDELLGKSGRYAQLWTQQNSSVDMLDAAIKL 727          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: AB24B_ARATH (ABC transporter B family member 24, mitochondrial OS=Arabidopsis thaliana GN=ABCB24 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.639e-39
Identity = 78/100 (78.00%), Postives = 91/100 (91.00%), Query Frame = -2
Query:  186 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNN 485
            SGGEKQRVALARAFLK+P ILLCDEATSALDS TEAEI+  L+SLA+NRT IFIAHRLTTAMQCDEI+V+E GKV+E+G+H+ LL K+GRYA+LW QQN+
Sbjct:  577 SGGEKQRVALARAFLKSPAILLCDEATSALDSKTEAEIMKTLRSLASNRTCIFIAHRLTTAMQCDEILVMEKGKVVEKGTHEVLLGKSGRYAKLWTQQNS 676          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: AB23B_ARATH (ABC transporter B family member 23, mitochondrial OS=Arabidopsis thaliana GN=ABCB23 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.639e-39
Identity = 78/103 (75.73%), Postives = 91/103 (88.35%), Query Frame = -2
Query:  177 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTAD 485
            SGGEKQRVALARAFLK+P ILLCDEAT+ALDS TEAEI+   +SLA+NRT IFIAHRLTTAMQCDEIIV+E GKV+E+G+H  LL K+GRYA+LW QQN+T +
Sbjct:  575 SGGEKQRVALARAFLKSPAILLCDEATNALDSKTEAEIMKTFRSLASNRTCIFIAHRLTTAMQCDEIIVMEKGKVVEKGTHQVLLEKSGRYAKLWTQQNSTLE 677          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ABCB7_MOUSE (ATP-binding cassette sub-family B member 7, mitochondrial OS=Mus musculus GN=Abcb7 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 3.209e-26
Identity = 60/108 (55.56%), Postives = 77/108 (71.30%), Query Frame = -2
Query:  165 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGR-YAQLWGQQNNTADAIDA 485
            SGGEKQRVA+ARA LK PP++L DEATS+LDS TE  IL A++ +  +RTSIFIAHRL+T +  DEIIVL  GKV E+G+H  LL  +   Y ++W  Q+N     D+
Sbjct:  610 SGGEKQRVAIARAILKNPPVILYDEATSSLDSITEETILGAMRDVVKHRTSIFIAHRLSTVVDADEIIVLSQGKVAERGTHYGLLANSSSIYTEMWHTQSNRVQNQDS 717          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ABCB7_HUMAN (ATP-binding cassette sub-family B member 7, mitochondrial OS=Homo sapiens GN=ABCB7 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 5.474e-26
Identity = 59/101 (58.42%), Postives = 76/101 (75.25%), Query Frame = -2
Query:  186 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQNN 485
            SGGEKQRVA+ARA LK PP++L DEATS+LDS TE  IL A+K +  +RTSIFIAHRL+T +  DEIIVL+ GKV E+G+H  LL      Y+++W  Q++
Sbjct:  610 SGGEKQRVAIARAILKDPPVILYDEATSSLDSITEETILGAMKDVVKHRTSIFIAHRLSTVVDADEIIVLDQGKVAERGTHHGLLANPHSIYSEMWHTQSS 710          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ABCB6_DICDI (ABC transporter B family member 6 OS=Dictyostelium discoideum GN=abcB6 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.149e-26
Identity = 56/102 (54.90%), Postives = 76/102 (74.51%), Query Frame = -2
Query:  180 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTA 485
            SGGEKQRV++ARA LK PPIL+ DEA+S+LD+ TE +I  A+  ++  RT++ IAHRL+T + CDEI+VL+ G ++E+GSH  LL   G YA LW QQ  +A
Sbjct:  564 SGGEKQRVSIARALLKDPPILILDEASSSLDTFTERKIQQAINEVSKGRTTLVIAHRLSTIIHCDEILVLKGGHIVERGSHSYLLDFNGDYAHLWNQQQLSA 665          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ABCB7_RAT (ATP-binding cassette sub-family B member 7, mitochondrial OS=Rattus norvegicus GN=Abcb7 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.593e-25
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = -2
Query:  189 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGR-YAQLWGQQN 485
            SGGEKQRVA+ARA LK PP++L DEATS+LDS TE  IL A++ +  +RTSIFIAHRL+T +  DEIIVL  GKV E+G+H  LL  +   Y+++W  Q+
Sbjct:  610 SGGEKQRVAIARAILKDPPVILYDEATSSLDSITEETILGAMRDVVKHRTSIFIAHRLSTVVDADEIIVLSQGKVAERGTHYGLLANSSSIYSEMWHTQS 709          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: ABCB6_XENTR (ATP-binding cassette sub-family B member 6, mitochondrial OS=Xenopus tropicalis GN=abcb6 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.080e-25
Identity = 54/104 (51.92%), Postives = 78/104 (75.00%), Query Frame = -2
Query:  174 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADA 485
            SGGEKQRVA+AR  LKAP I+L DEATSALD+ TE  I  +L  +  NRT+I +AHRL+T +  D+I+VL+ G+++E+G H++LL K G YA +W +Q + +++
Sbjct:  719 SGGEKQRVAIARTILKAPQIILLDEATSALDTETERNIQASLAKVCANRTTIVVAHRLSTVINSDQILVLKEGQIVERGRHEELLLKGGVYAGMWQKQQSGSES 822          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA_THIDA (Lipid A export ATP-binding/permease protein msbA OS=Thiobacillus denitrificans (strain ATCC 25259) GN=msbA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.905e-25
Identity = 55/98 (56.12%), Postives = 74/98 (75.51%), Query Frame = -2
Query:  192 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 485
            SGG++QR+A+ARA LK  PIL+ DEATSALDS +E  +  AL++L  NRT++ IAHRL+T  + + I+VLE G+++E G+H DLL K GRYAQL   Q
Sbjct:  479 SGGQRQRIAIARAILKNAPILILDEATSALDSESERHVQAALETLMQNRTTLVIAHRLSTIERANRIVVLEGGRIVETGAHADLLAKQGRYAQLHALQ 576          
BLAST of DN617323 vs. ExPASy Swiss-Prot
Match: MSBA1_COLP3 (Lipid A export ATP-binding/permease protein msbA 1 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=msbA1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.761e-24
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = -2
Query:  204 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 485
            SGG++QRVA+ARA L   P L+ DEATSALD+ +E  I +AL++L  NRTSI IAHRL+T    D+IIV+E GK++EQG+H  LL K G YAQL
Sbjct:  503 SGGQRQRVAIARALLCDTPFLILDEATSALDTESERHIQDALQTLQQNRTSIVIAHRLSTIENADKIIVMEQGKIVEQGNHQSLLAKQGAYAQL 596          
The following BLAST results are available for this feature:
BLAST of DN617323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AB25B_ARATH6.645e-4883.78ABC transporter B family member 25, mitochondrial ... [more]
AB24B_ARATH5.639e-3978.00ABC transporter B family member 24, mitochondrial ... [more]
AB23B_ARATH5.639e-3975.73ABC transporter B family member 23, mitochondrial ... [more]
ABCB7_MOUSE3.209e-2655.56ATP-binding cassette sub-family B member 7, mitoch... [more]
ABCB7_HUMAN5.474e-2658.42ATP-binding cassette sub-family B member 7, mitoch... [more]
ABCB6_DICDI7.149e-2654.90ABC transporter B family member 6 OS=Dictyostelium... [more]
ABCB7_RAT1.593e-2558.00ATP-binding cassette sub-family B member 7, mitoch... [more]
ABCB6_XENTR2.080e-2551.92ATP-binding cassette sub-family B member 6, mitoch... [more]
MSBA_THIDA7.905e-2556.12Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA1_COLP31.761e-2459.57Lipid A export ATP-binding/permease protein msbA 1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617323 ID=DN617323; Name=DN617323; organism=Citrus sinensis; type=EST; length=486bp
TATAGTCACCCATTTGTATATATANGTCAAAACAAAAAAATTACAAAGAT
TACAAAATTGAAAAGGTTACATCTACAGATTTTGCACGGATACAAAAGTA
TGCTCGAGCAATTTTACTTGTATGTATGTCACTAACTTTAGTTTTATGCT
CCTAATTTGACGGCTGCATCAATGGCATCCGCGGTATTATTTTGCTGTCC
CCATAGCTGAGCATATCTCCCTGCTTTTGTCAACAGATCATCATGGGAAC
CCTGTTCAATTACCTTCCCATTTTCCAGAACTATAATCTCATCGCACTGC
ATTGCAGTTGTGAGCCTGTGAGCTATGAAAATTGAAGTTCTATTATTTGC
CAGTGACTTCAATGCATTTAATATCTCAGCTTCAGTTGTGCTGTCAAGTG
CACTTGTAGCTTCATCACATAACAAAATAGGAGGTGCTTTTAAGAATGCA
CGGGCTAGGGCCACACGCTGCTTCTCACCACCACTT
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