DN617319

Overview
NameDN617319
Unique NameDN617319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:790..1291. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617319 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.737e-25
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = -2
Query:  319 WGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 501
            WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  281 WGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of DN617319 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 7.449e-24
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = -2
Query:  343 WGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 501
            WGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  392 WGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of DN617319 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.167e-23
Identity = 39/60 (65.00%), Postives = 52/60 (86.67%), Query Frame = -2
Query:  322 WGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 501
            WGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  400 WGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of DN617319 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.524e-19
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = -2
Query:  346 WGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 501
            WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  411 WGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of DN617319 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.988e-14
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = -2
Query:  343 WGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 501
            WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  420 WGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of DN617319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CYSPL_SOLLC6.737e-2575.41Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYA_ORYSJ7.449e-2481.13Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH2.167e-2365.00Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYB_ORYSJ5.524e-1971.15Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ6.988e-1450.88Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01A20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617319 ID=DN617319; Name=DN617319; organism=Citrus sinensis; type=EST; length=502bp
AAATATCAATTCATAAAAGCCTCCGCTGAATGATGCCAGGGATTTGGTGG
AGGACATTGGAAATAGATAACAACAATTTGTTTGTGCATTGTTCGGATTC
AACGCAGATAGATAACTTACAACGCTATATACAAAACCAACGTCCGAATA
AATATTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGAAATGAAA
TGCAGTAAAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCACGAAT
ATCTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACTATAA
TTAAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGTTTAG
CAGGGGTGCGTCGCAATGCCCTCACTCCCAATGGGTTGTCCTTGCTCATC
AAGCAGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGCAGCA
GCTATAGTGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCC
AT
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