DN617315

Overview
NameDN617315
Unique NameDN617315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1124 contig Csv1_Contig1124:11..538. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617315 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 4.213e-60
Identity = 109/131 (83.21%), Postives = 119/131 (90.84%), Query Frame = -2
Query:  135 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 527
            QQQNSTA RMA+ILEAHPKV  V+YPGL SHPEH +A +QMTGFGGVVSFE+DGD+  TIKF+D+LKIPYIAPSFGGCESIVDQPAIMSYWDL Q ERLKYGI DNLVRFSFGVEDFED+KAD+LQAL AI
Sbjct:  433 QQQNSTAFRMAEILEAHPKVSHVYYPGLPSHPEHELAKRQMTGFGGVVSFEIDGDIETTIKFVDSLKIPYIAPSFGGCESIVDQPAIMSYWDLPQEERLKYGIKDNLVRFSFGVEDFEDVKADILQALEAI 563          
BLAST of DN617315 vs. ExPASy Swiss-Prot
Match: METC_COXBU (Cystathionine beta-lyase OS=Coxiella burnetii GN=metC PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.047e-26
Identity = 58/122 (47.54%), Postives = 84/122 (68.85%), Query Frame = -2
Query:  144 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 509
            A+++A+ LE HPKVKRV+YPGL SHP+H IA +QM  FGG++S E+  DL  T K ++  ++  +A S GG ES+++ PAIM++  + Q+ER K GI D  +R S G+E   DL+ D+  AL
Sbjct:  266 AMQLAQWLEKHPKVKRVYYPGLPSHPQHSIAKKQMRYFGGMISVELKCDLNETKKVLERCQLFTLAESLGGVESLIEHPAIMTHASIPQAERQKLGITDGFIRLSVGIEAITDLRHDLEAAL 387          
BLAST of DN617315 vs. ExPASy Swiss-Prot
Match: CGL_DICDI (Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.047e-26
Identity = 56/128 (43.75%), Postives = 81/128 (63.28%), Query Frame = -2
Query:  144 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 527
            +     A  +   LE HPKV+RV YPGL SHP+H I  +QM G+GG+V F V G +  +  F++ +K+  +A S GG ES+++ P++M++  +   ER K GI D L+R S G+ED  DL AD+ QAL
Sbjct:  257 EAHQKNAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHASVPAEERAKLGISDTLIRLSVGIEDINDLLADISQAL 384          
BLAST of DN617315 vs. ExPASy Swiss-Prot
Match: METZ_PSEAE (O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa GN=metZ PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = -2
Query:  135 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 527
            Q  +++AL +A+ LE  P ++RV+Y GL SHP+H +A +Q +GFG VVSF+V G   A  +FIDA ++  I  + G  ++ +  PA  S+  LS  +R + GI D+L+R + G+ED +DLKAD+ + L A+
Sbjct:  273 QAHSASALALAEWLERQPGIERVYYAGLPSHPQHELARRQQSGFGAVVSFDVKGGRDAAWRFIDATRMVSITTNLGDTKTTIAHPATTSHGRLSPEDRARAGIGDSLIRVAVGLEDLDDLKADMARGLAAL 403          
BLAST of DN617315 vs. ExPASy Swiss-Prot
Match: CGL_PIG (Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.416e-23
Identity = 55/123 (44.72%), Postives = 82/123 (66.67%), Query Frame = -2
Query:  138 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 506
            + +A+ LE+HP V++V YPGL SHP+H +A +Q TG  G++SF + G L     F+ +LK+  +A S GG ES+ + PAIM++  + +S+R   GI D L+R S G+ED +DL  D+ QAL A
Sbjct:  274 MAVAQFLESHPLVEKVIYPGLPSHPQHELAKRQCTGCPGMISFYIKGSLHHAETFLKSLKLFTLAESLGGYESLAELPAIMTHSSVPKSDREVLGIRDTLIRLSVGLEDKQDLMDDLDQALKA 396          
BLAST of DN617315 vs. ExPASy Swiss-Prot
Match: CGL2_CAEEL (Putative cystathionine gamma-lyase 2 OS=Caenorhabditis elegans GN=cth-2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.415e-23
Identity = 53/122 (43.44%), Postives = 80/122 (65.57%), Query Frame = -2
Query:  144 ALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 509
            AL +AK LEA+ +++ V YP L SHP+H +  +Q  G  G++SF + G+L  +  F+ ALK+  +A S GG ES+ + P+IM++  +    R+  GI DNL+R S G+ED +DL AD+ QAL
Sbjct:  264 ALAVAKYLEANDRIESVLYPALPSHPQHEVHEKQTKGMSGMISFYLKGELQESRAFLSALKVFTLAESLGGYESLAELPSIMTHASVPAETRIVLGITDNLIRISVGIEDLDDLVADLDQAL 385          
BLAST of DN617315 vs. ExPASy Swiss-Prot
Match: METB_HELPJ (Cystathionine gamma-synthase OS=Helicobacter pylori J99 GN=metB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.119e-23
Identity = 56/131 (42.75%), Postives = 82/131 (62.60%), Query Frame = -2
Query:  135 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 527
            +     AL +A+ LE HPKV+RV+YPGL +HP H +A  QM GF G+ SF +  D  A + F+++LK+  +  S GG ES+V  PA+M++  + +++R   GI D LVR S G+E  +DL  D+ QA   I
Sbjct:  250 EAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNHELAKAQMRGFSGMFSFTLKNDSEA-VAFVESLKLFILGESLGGVESLVGIPALMTHACIPKAQREAAGIRDGLVRLSVGIEHEQDLLEDLDQAFAKI 379          
BLAST of DN617315 vs. ExPASy Swiss-Prot
Match: METB_HELPY (Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.175e-23
Identity = 55/131 (41.98%), Postives = 83/131 (63.36%), Query Frame = -2
Query:  135 QQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 527
            +     AL +A+ LE HPKV+RV+YPGL +HP + +A +QM GF G++SF +  D  A + F+++LK+  +  S GG ES+V  PA M++  + +++R   GI D LVR S G+E  +DL  D+ QA   I
Sbjct:  250 EAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSGMLSFTLKNDSEA-VAFVESLKLFILGESLGGVESLVGIPAFMTHACIPKTQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKI 379          
BLAST of DN617315 vs. ExPASy Swiss-Prot
Match: CGL_RAT (Cystathionine gamma-lyase OS=Rattus norvegicus GN=Cth PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.198e-22
Identity = 53/123 (43.09%), Postives = 81/123 (65.85%), Query Frame = -2
Query:  138 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 506
            + +A+ LE++P+V++V YPGL SHP+H +A +Q TG  G+VSF + G L     F+  +K+  +A S GG ES+ + PAIM++  + + +R   GI D L+R S G+ED +DL  D+ QAL A
Sbjct:  273 MAVARFLESNPRVEKVIYPGLPSHPQHELAKRQCTGCPGMVSFYIKGTLQHAQVFLKNIKLFALAESLGGYESLAELPAIMTHASVPEKDRATLGISDTLIRLSVGLEDEKDLLEDLGQALKA 395          
BLAST of DN617315 vs. ExPASy Swiss-Prot
Match: CGL_BOVIN (Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.198e-22
Identity = 54/123 (43.90%), Postives = 82/123 (66.67%), Query Frame = -2
Query:  138 LRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 506
            + +A+ LE++P+V++V YPGL SHP+H +A +Q TG  G+V+F + G L     F+  LK+  +A S GG ES+ + PAIM++  + +S+R   GI D L+R S G+ED +DL  D+ QAL A
Sbjct:  274 MAVAQFLESNPQVEKVIYPGLPSHPQHELAKRQCTGCPGMVTFYIKGSLQHAETFLQNLKLFTLAESLGGYESLAELPAIMTHASVPKSDREVLGISDTLIRLSVGLEDKQDLLDDLDQALKA 396          
The following BLAST results are available for this feature:
BLAST of DN617315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
METB_ARATH4.213e-6083.21Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
METC_COXBU1.047e-2647.54Cystathionine beta-lyase OS=Coxiella burnetii GN=m... [more]
CGL_DICDI1.047e-2643.75Cystathionine gamma-lyase OS=Dictyostelium discoid... [more]
METZ_PSEAE1.672e-2441.98O-succinylhomoserine sulfhydrylase OS=Pseudomonas ... [more]
CGL_PIG1.416e-2344.72Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=... [more]
CGL2_CAEEL2.415e-2343.44Putative cystathionine gamma-lyase 2 OS=Caenorhabd... [more]
METB_HELPJ4.119e-2342.75Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
METB_HELPY9.175e-2341.98Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
CGL_RAT1.198e-2243.09Cystathionine gamma-lyase OS=Rattus norvegicus GN=... [more]
CGL_BOVIN1.198e-2243.90Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617315 ID=DN617315; Name=DN617315; organism=Citrus sinensis; type=EST; length=528bp
TTTAAGATTATTCCAAGGATTATTTGTCACTAAAACATAATAACAAAACG
AACATATTCAAACATCAAAAGAGAATGCCGTTAGGAAAAGTAAAATGAAA
AATTTGCGAAGGTGAAACACAAAAAACACTTCTATATGGCGTGCAGGGCC
TGAAGTACATCAGCCTTCAAATCTTCAAAATCTTCCACTCCAAAGCTAAA
GCGAACCAAGTTATCCATAATCCCATACTTGAGCCTCTCCGATTGGCTAA
GGTCCCAATACGACATTATAGCTGGCTGATCAACAATGCTCTCACAGCCA
CCGAAGGATGGAGCAATATATGGGATTTTCAAGGCATCAATAAATTTTAT
GGTGGCCGTTAGGTCTCCATCAACCTCAAAACTAACTACCCCACCAAAAC
CAGTCATTTGCTGTGTGGCAATGTGATGCTCAGGATGACTCTTCAAGCCT
GGATAGTGAACGCGCTTCACCTTTGGATGTGCCTCTAAAATCTTGGCCAT
CCTCAACGCAGTTGAATTTTGTTGCTGT
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