DN617310

Overview
NameDN617310
Unique NameDN617310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.441e-43
Identity = 87/125 (69.60%), Postives = 99/125 (79.20%), Query Frame = -1
Query:  195 VKSPRSL--VSRXXXXXXXXXXXXXXXXAMAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 563
            VKSP SL   S+                AMAVYKVKL+GP+GEE+EFDAPDDAYILD+AE AG+ELPYSCRAGACSTCAG + SGSVDQSDGSFLDD Q E+GYVLTC++YPKSDCVI+THKE +
Sbjct:   26 VKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGD 150          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.134e-40
Identity = 73/95 (76.84%), Postives = 90/95 (94.74%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            AVYKVKL+GPDG+E+EF+  DD YILD+AE+AG++LPYSCRAGACSTCAG +VSG+VDQSDGSFL+D+ +EKGYVLTC+AYP+SDCVI+THKE+E
Sbjct:   59 AVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETE 153          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.308e-40
Identity = 74/95 (77.89%), Postives = 85/95 (89.47%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            AVYKVKLIGPDG+ENEFD PDD YILD+AE+AG++LPYSCRAGACSTCAG +  G VDQSDGSFL+D+  EKGYVLTC+AYP+SD VI+THKE E
Sbjct:    2 AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEE 96          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.647e-39
Identity = 71/95 (74.74%), Postives = 87/95 (91.58%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            AVYKVKLIGP+GEENEF+  DD +ILD+AE+AG++LPYSCRAGACSTCAG +V G VDQS+GSFL+D+  EKG+VLTC+AYP+SDCVI+THKE+E
Sbjct:    2 AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETE 96          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.614e-37
Identity = 67/94 (71.28%), Postives = 85/94 (90.43%), Query Frame = -1
Query:  195 VYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 476
            ++KVKL+GPDG E+EF+APDD YIL++AE AG+ELP+SCRAG+CSTCAG M +G VDQS+GSFLDD QM +GY+LTCI+YPK+DCVI+THKE +
Sbjct:   60 LHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEED 153          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.705e-34
Identity = 68/96 (70.83%), Postives = 79/96 (82.29%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA Y VKLI PDGE N  +  DD YILD+AE+AG++LPYSCRAGACSTCAG + +GSVDQSD SFLDD+Q+E GYVLTC+AYP SDC I THKE +
Sbjct:    1 MASYTVKLITPDGE-NSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEED 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.028e-33
Identity = 67/96 (69.79%), Postives = 79/96 (82.29%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA Y VKLI PDGE +  +  DD YILD+AE+AG++LPYSCRAGACSTCAG + +GSVDQSD SFLDD+Q+E GYVLTC+AYP SDC I THKE +
Sbjct:    1 MASYTVKLITPDGESS-IECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEED 95          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV L+ PDG E   D P+D YILD AE+ G++LP+SCRAGACSTCAG ++ G VDQSD SFLDD+Q+EKG+VLTC+AYP+SDC I T++E E
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEE 96          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV L+ PDG E   D P+D YILD AE+ G++LP+SCRAGACSTCAG ++ G VDQSD SFLDD+Q+EKG+VLTC+AYP+SDC I T++E E
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEE 96          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKV L+ PDG E   D P+D YILD AE+ G++LP+SCRAGACSTCAG ++ G VDQSD SFLDD+Q+EKG+VLTC+AYP+SDC I T++E E
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEE 96          
The following BLAST results are available for this feature:
BLAST of DN617310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER3_MAIZE2.441e-4369.60Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER3_ARATH1.134e-4076.84Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER1_RAPSA4.308e-4077.89Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER2_RAPSA3.647e-3974.74Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER6_MAIZE2.614e-3771.28Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER_SYNY42.705e-3470.83Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY31.028e-3369.79Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER_THEVL1.342e-3365.63Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB1.342e-3365.63Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNEN1.342e-3365.63Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617310 ID=DN617310; Name=DN617310; organism=Citrus sinensis; type=EST; length=563bp
TTTTTTCTCTCTACCATATGTTGCATATCATAAACATGAAAGACTTAACA
CCAAATGGTAATGAAAAAGTTCATCGTCACAAGTGAAATGGAAAGCATTT
GTTCAGACCGACTCACAATGATCTACTGCTTTAGCACAAATAGAAAGCAC
AAAGCAGAAAGCAAAAGCCAAGATCATAACATTATTTAGTTAAGTTCAGA
TTCCTTGTGTGTATAAATCACACAATCTGATTTTGGATATGCAATGCATG
TAAGGACATAACCTTTCTCCATCTGGTTATCATCAAGGAATGATCCATCT
GATTGGTCAACAGAGCCTGAAACCATCAGGCCAGCGCAAGTAGAGCAGGC
ACCAGCGCGGCATGAGTAGGGGAGCTCCATTCCGGCATCTTCAGCAGAGT
CGAGGATGTAAGCATCGTCGGGGGCATCAAACTCGTTTTCCTCTCCATCT
GGTCCAATTAGTTTCACTTTGTAAACTGCCATTGCAGATACTTTGAATGA
AGAAGACTTNCAGCCAAAAGCTTTTGAAACACTCCTGGAAACCAAGGAAC
GGGGGCTCTTGAC
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