DN617296
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617296 vs. ExPASy Swiss-Prot
Match: C3H24_ARATH (Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana GN=At2g28450 PE=2 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 1.116e-50 Identity = 96/146 (65.75%), Postives = 115/146 (78.77%), Query Frame = 3 Query: 3 LPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKPTVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGRTPGKPLDVENLEVNISEVMLIVQVSSATFDDAVV 440 LP+W++ SR+ GGL C LEGI+ SP+ NGYRNKCEFSVG SLQ KPTVGF LG+F GVTAVEEPVDCPNVS+IA +YASIFQ+F++ S VWNRF++SGFWRQLTVREGR PG + E+ I+EVML+VQV D+A V Sbjct: 302 LPQWVLTSRDRGGLACNLEGIIESPITNGYRNKCEFSVGLSLQGKPTVGFSLGSFCAGVTAVEEPVDCPNVSKIASQYASIFQKFIENSKFQVWNRFQHSGFWRQLTVREGRKPGVFSNDEDAITRIAEVMLMVQVCLTGSDEAEV 447
BLAST of DN617296 vs. ExPASy Swiss-Prot
Match: TRM2A_MOUSE (tRNA (uracil-5-)-methyltransferase homolog A OS=Mus musculus GN=Trmt2a PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.861e-13 Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 3 Query: 3 LPEWIMKSREIGGLPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVR 329 LP +++ ++ C LEG+ SP YRNKCEF VG + K TVG LG ++ G AV P D ++ E + FQEF++ + ++ +G W+QLTVR Sbjct: 200 LPWLLLQRQQHNKACCPLEGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVR 309
BLAST of DN617296 vs. ExPASy Swiss-Prot
Match: TRM2A_HUMAN (tRNA (uracil-5-)-methyltransferase homolog A OS=Homo sapiens GN=TRMT2A PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13 Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 3 Query: 12 WIMKSREIGGLPC-KLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVREGR 338 W+++ R C LEG+ SP YRNKCEF VG + + TVG LG ++ G AV P D ++ E + FQEF++ + ++ +G W+QLTVR R Sbjct: 212 WLLEQRHKHNKACCPLEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSR 322
BLAST of DN617296 vs. ExPASy Swiss-Prot
Match: TRM2_HUMAN (tRNA (uracil-5-)-methyltransferase homolog OS=Homo sapiens GN=TRMT2B PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 9.234e-13 Identity = 40/97 (41.24%), Postives = 53/97 (54.64%), Query Frame = 3 Query: 42 LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVR 329 L C L I+ SP++NGYRNK FSV P TVGF LG +R+G + N+ E + A ++ FL+QS L F G+WR+LTVR Sbjct: 136 LSCLLHPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQVAQYYEVFLRQSPLEPCLVFHEGGYWRELTVR 232
BLAST of DN617296 vs. ExPASy Swiss-Prot
Match: TRM2_PONAB (tRNA (uracil-5-)-methyltransferase homolog OS=Pongo abelii GN=TRMT2B PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.206e-12 Identity = 40/97 (41.24%), Postives = 53/97 (54.64%), Query Frame = 3 Query: 42 LPCKLEGILGSPLVNGYRNKCEFSVGYSLQAKP-TVGFMLGNFREGVTAVEEPVDCPNVSEIACKYASIFQEFLQQSDLPVWNRFKNSGFWRQLTVR 329 L C L I+ SP++NGYRNK FSV P TVGF LG +R+G + N+ E + A ++ FL+QS L F G+WR+LTVR Sbjct: 118 LSCLLHPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNMVCVQSNHLKNIPEKHSQVAQYYEVFLRQSPLEPCLVFHEGGYWRELTVR 214 The following BLAST results are available for this feature:
BLAST of DN617296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DN617296 ID=DN617296; Name=DN617296; organism=Citrus sinensis; type=EST; length=443bpback to top |