DN135254

Overview
NameDN135254
Unique NameDN135254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135254 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.365e-41
Identity = 79/98 (80.61%), Postives = 90/98 (91.84%), Query Frame = 2
Query:  359 SGNTRKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRQSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGD 652
            S N ++L+R+YS+I+DDY SL+QVTEALARAGLESSNLIVGIDFTKSNEWTG RSFNR+SLH+IG   NPYEQAI+IIG+TLA FDEDNLIPCYGFGD
Sbjct:   86 SDNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGD 183          
BLAST of DN135254 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.072e-37
Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = 2
Query:  371 RKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRQSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGD 652
            +K DRRYS+I+D+Y SL QV+EAL RAGLESSNLIVGIDFTKSNEWTG +SFNR+SLH++ +  NPYEQAI+IIG+TLA FDEDNLIPCYGFGD
Sbjct:  124 KKFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGD 217          
BLAST of DN135254 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.949e-19
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 2
Query:  410 YKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRQSLHYIGDG-LNPYEQAISIIGKTLAVFDEDNLIPCYGFGD 652
            +K+LD + +A+  AGLE SNLI GID+TKSN + G+R+F+++ LH I    +NPY+Q I I+GKTL+ FD D  IP YGFGD
Sbjct: 7299 FKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVGKTLSSFDADGQIPAYGFGD 7380          
The following BLAST results are available for this feature:
BLAST of DN135254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH2.365e-4180.61E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH2.072e-3777.66E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL1.949e-1954.88Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionwca08f05 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08f05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135254 ID=DN135254; Name=DN135254; organism=Citrus sinensis; type=EST; length=652bp
CTTTTCATTTTTTTGATACCTTGTTTTCATTTGGATTGGTTTGGCAAATC
TAGTGGTTTGAGGTCTCGTCTTTGGATTGATTTCATTGATTTTTGTTGTG
TGTTGCGAAGGAGAACAGAGGTTCTTGTTAGAAATTGGCGAATTGCTGTG
GATAATTGAGTTGATGGGAGGCAGAAGCTCCAGGGAGGCGAGTTGGAGGC
AGGATTCATCGTTCCGATCAACTTCTTCATCTTGGGATCCTCAAACCGGG
TATTTGCAGTCCCCTTACGGTCAAGAAAGTCAGAATTATCCACCTCAGAC
TTATCCGCCCCCACAAACATACTCCACACAGCAGTATTATCCATCTTCTG
AAGAACACAGCGGTAATACAAGGAAGCTTGATAGGAGATATTCAAGAATT
GCTGATGATTACAAGTCCTTAGACCAGGTGACTGAAGCTCTTGCTCGTGC
TGGCCTTGAATCTTCTAATCTCATTGTTGGTATTGATTTCACAAAGAGTA
ATGAGTGGACAGGTAAAAGGTCATTTAACAGACAAAGCCTGCATTACATC
GGAGATGGTTTAAATCCCTATGAGCAAGCAATATCCATTATTGGGAAAAC
TTTAGCTGTCTTTGACGAGGATAACTTGATTCCCTGTTATGGATTTGGTG
AT
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