DN135239

Overview
NameDN135239
Unique NameDN135239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135239_ssr16 microsatellite DN135239_ssr16:16..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:114..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135239 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.229e-23
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 1
Query:   94 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSSVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 291
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DN135239 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.128e-18
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  103 TCGNCDCADRSQCVKKGSSYAADFVETDLSSVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 294
            TCGNCDC D+SQCVKKG+SY  D VET+ S V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DN135239 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.085e-18
Identity = 44/65 (67.69%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   94 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSSVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 288
            MSD CGNCDCAD SQCVKKG+S   D VETD S +  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DN135239 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.899e-17
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   94 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSSVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 288
            MS  C NCDC+D SQC KKG S+    VET+  S+ TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DN135239 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.899e-17
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   94 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSSVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 291
            MS  C NCDCAD +QCVKKG+SY    VET+  S+ TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DN135239 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.112e-15
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   94 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSSVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 291
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DN135239 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.112e-15
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   94 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSSVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 291
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DN135239 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.776e-13
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   94 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSSVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 291
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DN135239 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.749e-13
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   94 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSSVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 291
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DN135239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA3.229e-2369.70Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC3.128e-1860.94Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE4.085e-1867.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV5.899e-1760.00Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO5.899e-1760.61Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ1.112e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.112e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ1.776e-1350.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI6.749e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
back to top
Properties
Property NameValue
Genbank descriptionwca08d04 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08d04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135239 ID=DN135239|Name=DN135239|organism=Citrus sinensis|type=EST|length=600bp
TACGGCCGGGGANNNAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCC
CTCTATTTCCAGTTTTAAGTTCTAAGTTCTAAGCTCAATCAACATGTCGG
ACACCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAG
GGAAGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTCTGTCAG
CACCGTTGTTGTCATGGACGTTCAGGCTGCTGAGGCTGAAGGTAACTGCA
AGTGCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAA
TAAGCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATA
TTGTGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAAGAAAAATT
CTCTACTTCGTTTTTATGAAGGTCTACTACTAGTGTGTGGAGTGATGTGC
GTGTTGTGTCACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAAT
CATGTAATATATGGCCATGGCCATGACCGTGGCCTTGTGTGGTTTAATTT
TAATGTATTATTGTTAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top