DN135229

Overview
NameDN135229
Unique NameDN135229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135229_ssr3 microsatellite DN135229_ssr3:3..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:127..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135229 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.270e-23
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 3
Query:   81 MSDTCGNCDCADRSQCVKKGSGYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 278
            MSDTCGNCDCAD++QCVKKGS Y AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DN135229 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.870e-19
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 3
Query:   90 TCGNCDCADRSQCVKKGSGYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 281
            TCGNCDC D+SQCVKKG+ Y  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DN135229 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.870e-19
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 3
Query:   81 MSDTCGNCDCADRSQCVKKGSGYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 275
            MSD CGNCDCAD SQCVKKG+  + D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGN--SIDIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DN135229 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.511e-16
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 3
Query:   81 MSDTCGNCDCADRSQCVKKGSGYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 275
            MS  C NCDC+D SQC KKG  +    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DN135229 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.511e-16
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 3
Query:   81 MSDTCGNCDCADRSQCVKKGSGYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 278
            MS  C NCDCAD +QCVKKG+ Y    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DN135229 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.334e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 3
Query:   81 MSDTCGNCDCADRSQCVKKGSGYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 278
            MSD CGNCDCAD+SQCVKKG+ Y    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DN135229 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.334e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 3
Query:   81 MSDTCGNCDCADRSQCVKKGSGYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 278
            MSD CGNCDCAD+SQCVKKG+ Y    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DN135229 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.130e-13
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 3
Query:   81 MSDTCGNCDCADRSQCVKKGSGYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 278
            MSD CGNCDCAD+SQCVKKG+ Y    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DN135229 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.093e-13
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 3
Query:   81 MSDTCGNCDCADRSQCVKKGSGYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 278
            MSD CG+CDCAD+SQCVKKG+ Y    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DN135229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA2.270e-2368.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC9.870e-1959.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE9.870e-1966.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV3.511e-1656.92Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO3.511e-1657.58Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ1.334e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.334e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ2.130e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI8.093e-1346.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionwca08c02 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08c02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135229 ID=DN135229|Name=DN135229|organism=Citrus sinensis|type=EST|length=380bp
ACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATTTCCAGT
TTTAAGTTCTAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGCAA
CTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCGGCTATG
CTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTGTC
ATGGACGTTCAGGCTGCTGAGGCTGAAGGTAACTGCAAGTGCGGCCCCAC
CTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACACAT
GCAGCAAAAAAATAAGAAGCCGCAAGTGTGCCTAAATATTGTGGGGGTTA
AGAATAATGTAAGGGTGATTAAAAAAAAAA
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