DN135214

Overview
NameDN135214
Unique NameDN135214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2495 contig Csv1_Contig2495:128..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: ECH1_HUMAN (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Homo sapiens GN=ECH1 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.563e-35
Identity = 78/163 (47.85%), Postives = 104/163 (63.80%), Query Frame = 3
Query:   12 FLSEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVF 497
            F  E  +  + + ++ +  A+V+SG G  F +GIDL  ++S        D  R S   R  I   Q+    IERC KPVIA++HG CIGGGVD+VTACDIR+C++DAFF VKEVD+ + AD+GTLQRLP ++G  + + ELA T R+    EA   GLVSRVF
Sbjct:   85 FWREMVECFNKISRDADCRAVVISGAGKMFTAGIDLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVF 247          
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: ECH1_MOUSE (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Mus musculus GN=Ech1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.042e-35
Identity = 76/165 (46.06%), Postives = 105/165 (63.64%), Query Frame = 3
Query:    6 REFLSEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVF 497
            R F  E  +    + ++ +  A+V+SG G  F SGIDL  ++S     +  D  R +   R  I   Q   T IE+C KPVIA+IHG CIGGGVD+V+ACDIR+C++DAFF +KEVD+ + AD+GTLQRLP ++G  + + EL  + R+    EA + GLVSRVF
Sbjct:   82 RAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASELMQPSGDDAARIAWYLRDLISKYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLVSACDIRYCTQDAFFQIKEVDMGLAADVGTLQRLPKVIGNQSLVNELTFSARKMMADEALDSGLVSRVF 246          
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: ECH1_RAT (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Rattus norvegicus GN=Ech1 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 4.548e-35
Identity = 77/165 (46.67%), Postives = 104/165 (63.03%), Query Frame = 3
Query:    6 REFLSEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVF 497
            R F  E  +    + ++ +  A+V+SG G  F SGIDL  ++S        D  R +   R  I   Q   T IE+C KPVIA+IHG CIGGGVD+++ACDIR+C++DAFF VKEVD+ + AD+GTLQRLP ++G  + + EL  T R+    EA + GLVSRVF
Sbjct:   82 RAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVF 246          
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: ECH1_PONAB (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Pongo abelii GN=ECH1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.548e-35
Identity = 76/163 (46.63%), Postives = 104/163 (63.80%), Query Frame = 3
Query:   12 FLSEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAM-ELALTGRRFWGLEAKELGLVSRVF 497
            F  E  +  + + ++ +  A+V+SG G  F +G+DL  ++S        D  R S   R  I   Q+    IE+C KPVIA++HG CIGGGVD+VTACDIR+C++DAFF VKEVD+ + AD+GTLQRLP ++G  + + ELA T R+    EA   GLVSRVF
Sbjct:   85 FWREMVECFNKISRDADCRAVVISGAGKMFTAGVDLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIEKCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVF 247          
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: ECH1_DICDI (Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Dictyostelium discoideum GN=ech1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.674e-29
Identity = 66/163 (40.49%), Postives = 97/163 (59.51%), Query Frame = 3
Query:    9 EFLSEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVF 497
            +F +EF      +  +  +  ++L G G    +G++L  ++ +    +   + + +    + IR  Q ++  I +C KP IA IHGACIGGGVD++TACDIR CS DA FS++E  L+I ADLGTLQR+  IVG G A ELALTG+      A+   LV+ V+
Sbjct:   52 DFYNEFISIYDEIQNDSKIRCVILRGEGKGLTAGLNLGKIAPLITGDSEVSQSQNNLDLFKMIRRWQASLDKINKCSKPTIALIHGACIGGGVDMITACDIRLCSSDAKFSIRETKLSIIADLGTLQRISKIVGSGFARELALTGKDIDAKTAERFNLVNHVY 214          
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: YNGF_BACSU (Putative enoyl-CoA hydratase/isomerase yngF OS=Bacillus subtilis GN=yngF PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.191e-21
Identity = 54/163 (33.13%), Postives = 86/163 (52.76%), Query Frame = 3
Query:    9 EFLSEFPKALSSLDQNPNVNAIVLSGTGDH-FCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 494
            E L      +  ++ N N+  ++L+GTG+  FC+G DLK    + +           ++    +  +Q     ++   +PVIA+I+G+ +GGG+++  ACD+R  ++ A   + E  LAI    G  QRLP ++G G A E   TGRR    EAKE+GLV  V
Sbjct:   31 EMLRNLQMIIQEIEFNSNIRCVILTGTGEKAFCAGADLKERIKLKE-----------DQVLESVSLIQRTAALLDALPQPVIAAINGSALGGGLELALACDLRIATEAAVLGLPETGLAIIPGAGGTQRLPRLIGRGKAKEFIYTGRRVTAHEAKEIGLVEHV 182          
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: FADB_BACSU (Probable enoyl-CoA hydratase OS=Bacillus subtilis GN=fadB PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.018e-18
Identity = 56/161 (34.78%), Postives = 83/161 (51.55%), Query Frame = 3
Query:   15 LSEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTST---DRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVS 488
            L E    L   + +  V +I++ G G  F +G D+K  +S+  +  S+   +RG             Q  +  IE   KP+IA+IHGA +GGG+++  AC IR  ++DA   + E++L I       QRLP  VG   A+EL  +G    G EA +LGLVS
Sbjct:   30 LEELSSCLDQCETDAGVRSIIIHGEGRFFSAGADIKEFTSLKGNEDSSLLAERG-------------QQLMERIESFPKPIIAAIHGAALGGGLELAMACHIRIAAEDAKLGLPELNLGIIPGFAGTQRLPRYVGTAKALELIGSGEPISGKEALDLGLVS 177          
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: ECH12_MYCBO (Probable enoyl-CoA hydratase echA12 OS=Mycobacterium bovis GN=echA12 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.330e-18
Identity = 55/155 (35.48%), Postives = 85/155 (54.84%), Query Frame = 3
Query:   30 KALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITA-DLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSR 491
            +AL+ +  + +V  +VL+G G  F SG D K+ + V  H  +  R  ++    R +  L D +  + R  +PVIA+++G  IGGG+ +  A DIR  S  A+F    ++  +TA +LG    LP  +G   A E+ LTGR     EA+ +GLVSR
Sbjct:   53 EALAQVSYDNSVRVVVLTGAGRGFSSGADHKS-AGVVPHVENLTRPTYA---LRSMELLDDVILMLRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVSAEEAERIGLVSR 203          
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: ECHM_MOUSE (Enoyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.736e-18
Identity = 58/161 (36.02%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   15 LSEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVF 497
            + E  +AL + +Q+P V AIVL+G    F +G D+K + +       T +  +S KF        D +T   R +KPVIA+++G  +GGG ++   CDI +  + A F   E+ L      G  QRL   VG   AME+ LTG R    +AK+ GLVS++F
Sbjct:   66 IEELNQALETFEQDPAVGAIVLTGGDKAFAAGADIKEMQN------RTFQDCYSSKFLSH----WDHIT---RVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIF 213          
BLAST of DN135214 vs. ExPASy Swiss-Prot
Match: ECHA8_MYCTU (Probable enoyl-CoA hydratase echA8 OS=Mycobacterium tuberculosis GN=echA8 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.268e-18
Identity = 51/162 (31.48%), Postives = 84/162 (51.85%), Query Frame = 3
Query:    9 EFLSEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 494
            + ++E   A + LD +P++ AI+++G+   F +G D+K ++ +T          F++ F  D       + A+   R P IA++ G  +GGG ++   CD+   +  A F   E+ L +   +G  QRL   +G   AM+L LTGR     EA+  GLVSRV
Sbjct:   31 QVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLT----------FADAFTADFFATWGKLAAV---RTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRV 179          
The following BLAST results are available for this feature:
BLAST of DN135214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
ECH1_HUMAN1.563e-3547.85Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_MOUSE2.042e-3546.06Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_RAT4.548e-3546.67Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_PONAB4.548e-3546.63Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
ECH1_DICDI1.674e-2940.49Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
YNGF_BACSU2.191e-2133.13Putative enoyl-CoA hydratase/isomerase yngF OS=Bac... [more]
FADB_BACSU1.018e-1834.78Probable enoyl-CoA hydratase OS=Bacillus subtilis ... [more]
ECH12_MYCBO1.330e-1835.48Probable enoyl-CoA hydratase echA12 OS=Mycobacteri... [more]
ECHM_MOUSE1.736e-1836.02Enoyl-CoA hydratase, mitochondrial OS=Mus musculus... [more]
ECHA8_MYCTU2.268e-1831.48Probable enoyl-CoA hydratase echA8 OS=Mycobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionwca07h11 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07h11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135214 ID=DN135214; Name=DN135214; organism=Citrus sinensis; type=EST; length=521bp
GGGGACGTGAATTCCTCTCTGAATTCCCTAAGGCCTTATCTTCCCTCGAC
CAAAATCCTAACGTCAACGCCATCGTCCTCTCAGGCACCGGCGACCACTT
CTGCTCCGGAATCGATCTGAAAACACTAAGTTCGGTCACCGACCATACCA
CTTCCACCGACCGCGGCCGCTTCTCCGAGAAGTTCCGGCGAGATATCAGG
TTCTTGCAGGATGCGGTAACTGCCATCGAGCGATGTCGGAAGCCAGTCAT
CGCATCTATCCACGGGGCGTGTATCGGAGGCGGCGTCGATATTGTCACTG
CCTGTGATATTCGGTTCTGTTCAAAAGATGCTTTTTTTTCGGTCAAAGAG
GTTGACTTGGCTATCACGGCAGATCTCGGGACTTTACAGAGGCTTCCGGC
GATTGTCGGGTATGGTAACGCGATGGAATTGGCGTTGACGGGTCGTAGGT
TTTGGGGTTTGGAGGCTAAGGAGTTGGGTCTGGTTTCTCGGGTTTTCGGG
ACGAGTTATGAATTGGATCAG
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