DN135209

Overview
NameDN135209
Unique NameDN135209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135209_ssr270 microsatellite DN135209_ssr270:270..281. BLAST: Citrus ESTs to Prunus persica proteins V1
DN135209_ssr362 microsatellite DN135209_ssr362:362..373. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1307 contig Csv1_Contig1307:190..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.999e-21
Identity = 51/68 (75.00%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    4 IERERWKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF 207
            IE+E+ + ENPEAM          IKA HFEESMKYARRSVSDADIRKYQ FAQTLQQSRGFGSEFRF
Sbjct:  711 IEKEKRRSENPEAMEEDGVDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778          
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: CDC48_SOYBN (Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.663e-20
Identity = 55/76 (72.37%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    4 IERERWKMENPEAMXXXXXXXXXX-IKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF---ADRT 219
            IERER   ENPEAM           IKA HFEESMK+ARRSVSDADIRKYQ FAQTLQQSRGFGSEFRF    DRT
Sbjct:  711 IERERKSRENPEAMDEDTVDDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPESGDRT 786          
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: CDC48_CAPAN (Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.131e-19
Identity = 50/70 (71.43%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    4 IERERWKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFAD 213
            IERE+ + ENP++M          IK  HFEESMKYARRSVSDADIRKYQ FAQTLQQSRGFG+EFRFAD
Sbjct:  711 IEREKRRQENPDSMDEDVDEVPE-IKPAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFAD 779          
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: CD48D_ARATH (Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.131e-19
Identity = 52/70 (74.29%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    4 IERERWKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFAD 213
            IE+ER + E+PEAM          IKA HFEESMKYARRSVSDADIRKYQ FAQTLQQSRGFGSEFRF D
Sbjct:  711 IEKERKRAESPEAMEEDEEEIAE-IKAGHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPD 779          
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: CD48E_ARATH (Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.615e-19
Identity = 50/69 (72.46%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    4 IERERWKMENPEAMXXXXXXXXXX-IKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF 207
            IE ER + +NPEAM           I+A HFEESMKYARRSVSDADIRKYQ FAQTLQQSRGFGSEFRF
Sbjct:  710 IENERRRSQNPEAMEEDMVDDEVSEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778          
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: TERA_XENTR (Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis GN=vcp PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.391e-15
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    4 IERERWKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF 207
            I RER +  NP AM          I+  HFEE+M++ARRSVSD DIRKY++FAQTLQQSRGFGS FRF
Sbjct:  707 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 773          
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 8.391e-15
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    4 IERERWKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF 207
            I RER +  NP AM          I+  HFEE+M++ARRSVSD DIRKY++FAQTLQQSRGFGS FRF
Sbjct:  707 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 773          
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 80.4925 bits (197), Expect = 8.391e-15
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    4 IERERWKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF 207
            I RER +  NP AM          I+  HFEE+M++ARRSVSD DIRKY++FAQTLQQSRGFGS FRF
Sbjct:  707 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 773          
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 8.391e-15
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    4 IERERWKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF 207
            I RER +  NP AM          I+  HFEE+M++ARRSVSD DIRKY++FAQTLQQSRGFGS FRF
Sbjct:  707 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 773          
BLAST of DN135209 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 8.391e-15
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    4 IERERWKMENPEAMXXXXXXXXXXIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFGSEFRF 207
            I RER +  NP AM          I+  HFEE+M++ARRSVSD DIRKY++FAQTLQQSRGFGS FRF
Sbjct:  707 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRF 773          
The following BLAST results are available for this feature:
BLAST of DN135209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CD48A_ARATH5.999e-2175.00Cell division control protein 48 homolog A OS=Arab... [more]
CDC48_SOYBN8.663e-2072.37Cell division cycle protein 48 homolog OS=Glycine ... [more]
CDC48_CAPAN1.131e-1971.43Cell division cycle protein 48 homolog OS=Capsicum... [more]
CD48D_ARATH1.131e-1974.29Cell division control protein 48 homolog D OS=Arab... [more]
CD48E_ARATH5.615e-1972.46Cell division control protein 48 homolog E OS=Arab... [more]
TERA_XENTR8.391e-1561.76Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
TERA_RAT8.391e-1561.76Transitional endoplasmic reticulum ATPase OS=Rattu... [more]
TERA_PIG8.391e-1561.76Transitional endoplasmic reticulum ATPase OS=Sus s... [more]
TERA_MOUSE8.391e-1561.76Transitional endoplasmic reticulum ATPase OS=Mus m... [more]
TERA_HUMAN8.391e-1561.76Transitional endoplasmic reticulum ATPase OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionwca07h05 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07h05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135209 ID=DN135209; Name=DN135209; organism=Citrus sinensis; type=EST; length=649bp
GGGATTGAGAGGGAGAGGTGGAAGATGGAGAACCCTGAAGCAATGGAAGA
ANNNGAGGTCGATGATGTCGATGAGATTAAGGCAGTACACTTTGAGGAAT
CAATGAAATATGCCCGCCGGAGTGTCAGTGATGCAGACATCCGGAAATAC
CAGCTCTTTGCACAGACCTTGCAACAATCTCGTGGGTTTGGGTCCGAATT
CCGGTTTGCAGATCGTACCGAGAGTGCCGCCGCTGGGGCTGCAGATCCAT
TCTCTTCTGCCGCTGCTGCTGATGATGATGATCTATACAACTGAACTAAA
ACCGACGAAAGTTGAAGACACTGCAGTAAATGGAACATCTAGTGCCATGG
GAATATTAATTATTAATTAATTATTGCCTAGGAACACTAGTGTATACTAC
TTTCGTGTTGACTCAGTTTCATGCTTTTTGTTATGTGAAATTTCATAGTA
TTAACTTAACATAATGTATCAATGGGTGTTGAAATTTTCCTATTTCAAAT
TTAGAATCTTAATACCAACCAGACTATTAATGTGTTAGGTGTTTCGCCTC
CTAGAAGTGATTATAGCATTCTCATAGTTCATGTTACTAACTTGCTCCTA
CCGTCATGATGAATGAGCCCGTGTTCTCGTGACGGTCGTCGCATGTCTG
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