DN135169

Overview
NameDN135169
Unique NameDN135169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5696 contig Csv1_Contig5696:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135169 vs. ExPASy Swiss-Prot
Match: SYP71_ARATH (Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.809e-28
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = 2
Query:  101 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELGSK 418
            M+VID++TRVD+IC            E N+ GDDAFARLYG  +  ++ AL+K+E    EKNRA AVAMNAEIRRTKARL EEV KLQRLA K+VKGL+ EEL ++
Sbjct:    1 MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKEKNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAAR 106          

HSP 2 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 50/98 (51.02%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  369 LLLKR*KGFQKRNLA-RSDLVAALKDRIEGIPDXXXXXXXXXXXXXXXXXXXX--IKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQGLDVI 653
            L +KR KG     LA R+DLV AL  RIE IPD                      IKFD  S G+FDD+YFQE+ ESS FRQEYEMR++KQ+QGLD+I
Sbjct:   90 LAVKRVKGLTTEELAARNDLVLALPARIEAIPDGTAGGPKSTSAWTPSSTTSRPDIKFD--SDGRFDDDYFQESNESSQFRQEYEMRKIKQEQGLDMI 185          
BLAST of DN135169 vs. ExPASy Swiss-Prot
Match: SYP73_ARATH (Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.458e-27
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 2
Query:  101 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELGSK 418
            M VIDLITRVD+IC            + NV GDDAF+RLY  V+  L+  LQK+E  ++E N+A AVAMNAEIRRTKARLLE + KLQRL+ KKVKGLSKEEL ++
Sbjct:    1 MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSETNKAKAVAMNAEIRRTKARLLEGIPKLQRLSLKKVKGLSKEELDAR 106          
BLAST of DN135169 vs. ExPASy Swiss-Prot
Match: SYP72_ARATH (Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.077e-25
Identity = 59/106 (55.66%), Postives = 77/106 (72.64%), Query Frame = 2
Query:  101 MSVIDLITRVDAICXXXXXXXXXXXXELNVYGDDAFARLYGVVQADLDAALQKSEAAATEKNRATAVAMNAEIRRTKARLLEEVAKLQRLAFKKVKGLSKEELGSK 418
            M VID+I RVD IC            E+   GDDAF+RL+  + +D++A L+K+E A+TEKNRA AVAMNAE+RRTKARL E+V KLQ+LA KK+KGL++EE  S+
Sbjct:    1 MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTEKNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESR 106          

HSP 2 Score: 68.9366 bits (167), Expect = 2.551e-11
Identity = 44/98 (44.90%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  369 LLLKR*KGFQKRNL-ARSDLVAALKDRIEGIPDXXXXXXXXXXXXXXXXXXXX--IKFDTYSGGKFDDEYFQETEESSGFRQEYEMRRMKQDQGLDVI 653
            L +K+ KG  +    +R DLV AL DR++ IPD                      IKFD  S    DD +FQ++EESS FRQEYEMRR KQD+GLD+I
Sbjct:   90 LAVKKIKGLTREERESRCDLVIALADRLQAIPDGNEHGAKQANSDWGGASAPNKNIKFDM-SEEDMDDGFFQQSEESSQFRQEYEMRRKKQDEGLDII 186          
The following BLAST results are available for this feature:
BLAST of DN135169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYP71_ARATH8.809e-2859.43Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 ... [more]
SYP73_ARATH7.458e-2760.38Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 ... [more]
SYP72_ARATH1.077e-2555.66Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionwca07c04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07c04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135169 ID=DN135169; Name=DN135169; organism=Citrus sinensis; type=EST; length=655bp
GGGGGCTGCGGGGACNNNNNCCTGCCTCGACGACGTCGTCCTTTCTTGTC
TTTATTTTGAACTGAATTCGAAACCCATTGGGAGAAAATCAAAAGAGAAA
ATGAGTGTGATAGATTTGATCACAAGAGTCGACGCGATTTGCAAGAAATA
TGACAAGTACGATGTCGATAAACAAAAAGAGCTCAACGTCTACGGCGACG
ACGCTTTCGCTCGCCTGTACGGCGTCGTTCAGGCCGACCTCGACGCTGCT
CTGCAGAAATCGGAGGCGGCAGCAACAGAGAAAAATCGTGCGACGGCAGT
TGCGATGAACGCGGAGATACGAAGAACAAAAGCTAGGTTGCTTGAAGAAG
TGGCTAAATTACAAAGACTTGCTTTTAAAAAGGTAAAAGGGCTTTCAAAA
GAGGAACTTGGCTCGAAGTGACTTAGTTGCTGCTCTCAAAGATAGAATTG
AAGGGATACCTGATGGTTCAACAGCTGCAGCTAAACAAACTGGTGGTGGG
ACAACTTCGGCCTCATACACAGGAATCAAATTTGACACTTATTCAGGTGG
GAAATTTGATGATGAATATTTCCAAGAAACCGAGGAGTCGAGTGGGTTTA
GGCAAGAGTATGAGATGCGGAGAATGAAACAGGACCAAGGTTTAGATGTT
ATAGG
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