DN135168

Overview
NameDN135168
Unique NameDN135168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN135168 vs. ExPASy Swiss-Prot
Match: LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.838e-32
Identity = 67/90 (74.44%), Postives = 76/90 (84.44%), Query Frame = 3
Query:   63 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 332
            MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD  LL DA R+EA
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90          
BLAST of DN135168 vs. ExPASy Swiss-Prot
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.838e-32
Identity = 67/90 (74.44%), Postives = 76/90 (84.44%), Query Frame = 3
Query:   63 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 332
            MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD  LL DA R+EA
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90          
BLAST of DN135168 vs. ExPASy Swiss-Prot
Match: LSM2_DICDI (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.536e-30
Identity = 61/91 (67.03%), Postives = 78/91 (85.71%), Query Frame = 3
Query:   63 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREAR 335
            MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NCFIRGSVVRYV LP + VDV+ L D +R EAR
Sbjct:    1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91          
BLAST of DN135168 vs. ExPASy Swiss-Prot
Match: LSM2_YEAST (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae GN=LSM2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.507e-26
Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 3
Query:   63 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 329
            MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+ SVRN FIRGS VRYV L  + VD +LL DATRRE
Sbjct:    1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNKNMVDTNLLQDATRRE 89          
BLAST of DN135168 vs. ExPASy Swiss-Prot
Match: LSM2_SCHPO (U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces pombe GN=lsm2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.842e-25
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 3
Query:   63 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 329
            MLF+S+FK L+  EVTVELKND++IRG L SVDQ+LN+KLEN  VVD  KYPHM +V++ FIRGSVVRYV +    VD  LL DA RR+
Sbjct:    1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLADACRRD 89          
BLAST of DN135168 vs. ExPASy Swiss-Prot
Match: LSM2_ENTBH (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.048e-11
Identity = 35/91 (38.46%), Postives = 59/91 (64.84%), Query Frame = 3
Query:   63 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY----PHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATR 323
            MLFF YFK  +  E+ V LKND++I G L +VD +LNIK+EN   +  +++      + +++ C IRGS ++ V+L  +G++  ++ +ATR
Sbjct:    1 MLFFEYFKSQLNNEIIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKINKSITNIQLCSIRGSAIKSVELKKNGLEEHMV-EATR 90          
The following BLAST results are available for this feature:
BLAST of DN135168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LSM2_MOUSE1.838e-3274.44U6 snRNA-associated Sm-like protein LSm2 OS=Mus mu... [more]
LSM2_HUMAN1.838e-3274.44U6 snRNA-associated Sm-like protein LSm2 OS=Homo s... [more]
LSM2_DICDI8.536e-3067.03Probable U6 snRNA-associated Sm-like protein LSm2 ... [more]
LSM2_YEAST1.507e-2666.29U6 snRNA-associated Sm-like protein LSm2 OS=Saccha... [more]
LSM2_SCHPO2.842e-2564.04U6 snRNA-associated Sm-like protein LSm2 OS=Schizo... [more]
LSM2_ENTBH1.048e-1138.46Probable U6 snRNA-associated Sm-like protein LSm2 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionwca07c03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07c03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135168 ID=DN135168; Name=DN135168; organism=Citrus sinensis; type=EST; length=551bp
GGGGGGCATNNNCGANNNNCGAAAGCAAAGAAGCAGAACCCTGTCCATTA
CGGCGACGAAAAATGCTGTTCTTTTCATACTTCAAGGATTTGGTGGGCAG
AGAAGTGACTGTTGAGTTGAAGAACGATTTGGCAATAAGAGGGACTCTAC
ATTCAGTTGATCAGTACCTCAATATCAAGCTTGAGAATACGAGAGTGGTT
GATCAAGACAAGTACCCTCACATGCTTTCAGTGAGGAACTGTTTCATCAG
AGGATCAGTGGTTAGATATGTTCAACTGCCTCCTGATGGTGTTGATGTCG
ACCTGCTTCATGATGCCACAAGAAGAGAAGCTCGGGGTGGCTGAAGTTAG
TTGTTTAAATCTTCAATGTACTTTTGTAGACATTGGTTTTTCTTCTTTTA
GATGTAACTGTTTTTCTGTTTAAACAAAGCCTAATTGACAGTATAAAGGC
TGTATATCTGTTCCCTGTGCTAATGTGGATGGAGTCCCTCCTATTAATTG
GGAAAGTGTTGCTGGTTGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
back to top