DN135153

Overview
NameDN135153
Unique NameDN135153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135153_ssr38 microsatellite DN135153_ssr38:38..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5694 contig Csv1_Contig5694:1..419. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.453e-38
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            MGRSPCCEKAHTNKGAWTKEEDQRLI+YIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDL RGNFT+
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTE 72          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.204e-38
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            MGRSPCCEKAHTNKGAWTKEEDQRL+DYIR HGEGCWRSLPK+AGLLRCGKSCRLRWINYLRPDL RGNFTD
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTD 72          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.712e-37
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            MGRSPCCEKAHTNKGAWTKEED RL+ YIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDL RGNFT+
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTE 72          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.542e-37
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            MGRSPCCEKAHTNKGAWTKEED+RL+ YI+AHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDL RGNFT+
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTE 72          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            MGRSPCCEKAHTN+GAWTKEED+RL+ YIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDL RGNFT
Sbjct:    1 MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFT 71          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            MGRSPCCEKAHTNKGAWTKEED RL  YI+AHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDL RGNF+
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFS 71          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.539e-35
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            MGRSPCCEKAH NKGAWTKEEDQ L+DYIR HGEGCWRSLP+AAGL RCGKSCRLRW+NYLRPDL RGNFT+
Sbjct:    1 MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTE 72          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.260e-34
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            MGRSPCCEK HTNKGAWTKEED +LI YI+AHGEGCWRSLP++AGL RCGKSCRLRWINYLRPDL RGNFT
Sbjct:    1 MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFT 71          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.544e-27
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 2
Query:  206 GRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFTD 418
            GR+PCC K   N+G+WT +ED RLI YI+ HG   WR+LPK AGLLRCGKSCRLRWINYLRPDL RGNFTD
Sbjct:    4 GRAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTD 74          
BLAST of DN135153 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.813e-26
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 2
Query:  203 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLXRGNFT 415
            MGR+PCCEK    KG WT EED+ L+ +I+ HG G WR+LPK AGLLRCGKSCRLRWINYLRPD+ RGNF+
Sbjct:    1 MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFS 71          
The following BLAST results are available for this feature:
BLAST of DN135153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
MYB30_ANTMA2.453e-3895.83Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB6_ARATH3.204e-3894.44Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB08_ANTMA2.712e-3793.06Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB4_ARATH3.542e-3791.67Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB38_MAIZE6.042e-3792.96Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB1_HORVU8.725e-3691.55Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB3_ARATH2.539e-3587.50Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB32_ARATH1.260e-3487.32Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB1_MAIZE2.544e-2773.24Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYB4_ORYSJ2.813e-2670.42Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionwca07a04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca07a04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135153 ID=DN135153; Name=DN135153; organism=Citrus sinensis; type=EST; length=419bp
GGGGATATAACGATCGNNNNTCTTGCCTTCTCTCTCCCTCTCTCTCTCTC
TCTCTCTCTTCAGATAAATGACAAGTCCCCATCTCTCGTGTTAAAAAAAC
TCTTTTACAAAACGAACCGAACCCATCTCTCTTTTTCTTCATTACATGTT
GAGAAAAATTTAAAACAAAACTCAACTCTTCATCGTCATCATAAACAAGA
ACATGGGACGTTCGCCTTGCTGTGAAAAGGCTCATACAAACAAAGGAGCT
TGGACCAAAGAGGAAGACCAAAGGCTTATCGATTACATTCGTGCTCATGG
CGAAGGCTGCTGGCGCTCTCTCCCCAAAGCTGCCGGATTGCTAAGATGCG
GCAAGAGTTGTAGATTGAGATGGATAAACTATCTACGCCCTGATCTTNAG
CGTGGGAATTTTACCGATG
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