DN135127

Overview
NameDN135127
Unique NameDN135127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135127_ssr28 microsatellite DN135127_ssr28:28..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:102..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135127 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.406e-23
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 1
Query:  106 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVSCTCG 303
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C +CTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DN135127 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.107e-18
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  115 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVSCTCGS 306
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC  C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DN135127 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.205e-18
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  106 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVSCTC 300
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V AAE+ G CKCG +C CV+CTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DN135127 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.353e-16
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  106 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVSCTCG 303
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CVSCTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DN135127 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.936e-16
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 1
Query:  106 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVSCTC 300
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DN135127 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.496e-15
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 1
Query:  106 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVSCTCG 303
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DN135127 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.496e-15
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 1
Query:  106 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVSCTCG 303
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DN135127 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1
Query:  106 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVSCTCG 303
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DN135127 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1
Query:  106 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVSCTCG 303
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DN135127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA7.406e-2368.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.107e-1860.94Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE4.205e-1866.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MALDO1.353e-1660.61Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3_PRUAV3.936e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ1.496e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.496e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ1.828e-1350.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI6.948e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionwca06f04 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06f04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135127 ID=DN135127; Name=DN135127; organism=Citrus sinensis; type=EST; length=612bp
TTGGTACCCNNNNCNNNNGATCATCACAGCAAAGCAAAGCAAGTTTCGTA
CAATAAAGAGCCCTCTATTTCCAGTTTTAAGTTCTAAGTTCTAAGCTCAA
TCAACATGTCGGACACCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAG
TGTGTGAAGAAGGGAAGCAGCTATGCTGCTGACTTCGTCGAGACTGACTT
GAGCTTTGTCAGCACCGTTGTTGTCATGGACGTTCAGGCTGCTGAGGCTG
AAGGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTGAGCTGCACTTGT
GGTAGTCACTAATAAGCAAACACATGCAGCAAAAAATAAGAAGCTGCAAG
TGTGCCTAAATATTGTGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAA
AAAAAGAAAAATTCTCTACTTCGTTTTTATGATGGTCTACTACTAGTGTG
TGGAGTGATGTGCGTGTTGTGTCACCCATCACTCGTAATGTTTTGTGTTT
CCTTCTTCATAATCATGTAATATATGGCCATGGCCATGACCGTGGCCTTG
TGTGGTTTAATTTTAATGTATTATTGTTAGTAAAAAAAAAAANNNAAAAA
AAANNNAAAAAA
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