DN135112

Overview
NameDN135112
Unique NameDN135112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5271 contig Csv1_Contig5271:247..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135112 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 5.222e-47
Identity = 94/97 (96.91%), Postives = 94/97 (96.91%), Query Frame = 1
Query:  157 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAEPREMLLNHKVRAH 447
            MARSLFKAKLLLAPVADGISLSI RRGYAAAAPLGTISRTGIMEKNDL PAVREDSGASSAWAPDPITGYYRPENRAVEIDPAE REMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of DN135112 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.396e-21
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  157 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAEPREMLLNHKVRA 444
            MARS+   KLL A + DG+ +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID AE REMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of DN135112 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 52/104 (50.00%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  157 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAEPREMLLNHKVRA 444
            MARS+   K L A V D + +SI RRGY+ A P     +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID A+ REM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of DN135112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI5.222e-4796.91Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI8.396e-2152.88Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI6.017e-1950.00Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionwca06d06 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06d06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135112 ID=DN135112; Name=DN135112; organism=Citrus sinensis; type=EST; length=470bp
CGGGCCGGGGGAAGNNNNNCACAAATAGAGCNNNNCNNNNGCTTTTGCCT
ATAGCTACTGCAGGAGCAGCATCTTTCTTCTTCTGTAGTAGCACTGTACA
GAAACATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAAT
AAAACAATGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGT
TGCTGATGGCATCTCGCTCTCCATTGGCAGGAGAGGATATGCTGCAGCAG
CACCCTTGGGAACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTG
ACGCCTGCGGTGAGAGAGGATTCTGGGGCCTCTTCCGCCTGGGCCCCAGA
TCCCATCACTGGGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATC
CAGCAGAGCCTCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAG
GGAGTGGTCGCGCATAGCAG
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