DN135111

Overview
NameDN135111
Unique NameDN135111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length329
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1829 contig Csv1_Contig1829:1..329. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.668e-34
Identity = 70/77 (90.91%), Postives = 72/77 (93.51%), Query Frame = 1
Query:   97 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            +ESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF GVDMRIRV  GGHTSQIYA
Sbjct:    6 IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYA 82          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.009e-33
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 1
Query:   73 MATAKAXPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            MAT  A   ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRFAGV+MRIRV  GGHTSQ+YA
Sbjct:    1 MATQPA--TESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYA 83          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.154e-33
Identity = 67/85 (78.82%), Postives = 75/85 (88.24%), Query Frame = 1
Query:   73 MATAKAXPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            MAT  A   ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRFAGV+MRIRV  GGHTSQ+YA
Sbjct:    1 MATQPA--TESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYA 83          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.039e-32
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 1
Query:  100 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRHRF GVDMRIRV  GG TSQIYA
Sbjct:    7 ESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYA 82          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.256e-30
Identity = 63/85 (74.12%), Postives = 72/85 (84.71%), Query Frame = 1
Query:   73 MATAKAXPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            MAT  A   ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRFAGVDMRIR   GG+TS++YA
Sbjct:    1 MATQPAK--ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYA 83          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.616e-29
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 1
Query:   97 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            VESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +FAGVDMRIRV  GG+TSQIYA
Sbjct:    4 VESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYA 79          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.512e-27
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   94 PVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            P  +VQCFGRKKTAVAV+YCK GRGLIK+NG PIEL+ PE+LR KA+EPILL GR RF  +DMRIRV  GG TSQIYA
Sbjct:    9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYA 86          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.512e-27
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   94 PVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            P  +VQCFGRKKTAVAV+YCK GRGLIK+NG PIEL+ PE+LR KA+EPILL GR RF  +DMRIRV  GG TSQIYA
Sbjct:    9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYA 86          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_AEDAE (40S ribosomal protein S16 OS=Aedes aegypti GN=RpS16 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.725e-26
Identity = 51/85 (60.00%), Postives = 69/85 (81.18%), Query Frame = 1
Query:   73 MATAKAXPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            M  A+  PV +VQ FGRKKTA AV YCKRG+GL+++NG P++ +EP++L++K  EP+LLLG+ +FAGVD+RIRV  GGH +QIYA
Sbjct:    1 MVKARKEPVNAVQVFGRKKTATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGVDIRIRVSGGGHVAQIYA 85          
BLAST of DN135111 vs. ExPASy Swiss-Prot
Match: RS16_DROME (40S ribosomal protein S16 OS=Drosophila melanogaster GN=RpS16 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.865e-26
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 1
Query:   73 MATAKAXPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVXXGGHTSQIYA 327
            M   +  PV++VQ FGRKKTA AV YCKRG GL+K+NG P+E +EP++L++K  EP+LLLG+ +FAGVD+R+RV  GGH +QIYA
Sbjct:    1 MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYA 85          
The following BLAST results are available for this feature:
BLAST of DN135111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RS16_GOSHI1.668e-3490.9140S ribosomal protein S16 OS=Gossypium hirsutum GN... [more]
RS161_ARATH7.009e-3380.0040S ribosomal protein S16-1 OS=Arabidopsis thalian... [more]
RS163_ARATH9.154e-3378.8240S ribosomal protein S16-3 OS=Arabidopsis thalian... [more]
RS16_FRIAG2.039e-3286.8440S ribosomal protein S16 OS=Fritillaria agrestis ... [more]
RS162_ARATH3.256e-3074.1240S ribosomal protein S16-2 OS=Arabidopsis thalian... [more]
RS16_TORRU1.616e-2981.8240S ribosomal protein S16 OS=Tortula ruralis GN=RP... [more]
RS16_ORYSJ1.512e-2774.3640S ribosomal protein S16 OS=Oryza sativa subsp. j... [more]
RS16_ORYSI1.512e-2774.3640S ribosomal protein S16 OS=Oryza sativa subsp. i... [more]
RS16_AEDAE3.725e-2660.0040S ribosomal protein S16 OS=Aedes aegypti GN=RpS1... [more]
RS16_DROME4.865e-2660.0040S ribosomal protein S16 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionwca06d05 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06d05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135111 ID=DN135111; Name=DN135111; organism=Citrus sinensis; type=EST; length=329bp
GGGGACCGGTAGTCATTTNANNNTTTCTCTGTGTGTTGCGCGCGCTTCCC
TCATAGCAAACCCTAACAAAAAATGGCGACAGCAAAAGCANGTCCAGTGG
AATCTGTACAATGCTTCGGCCGCAAGAAGACTGCGGTCGCCGTGACTTAC
TGCAAGCGCGGTCGTGGGTTGATCAAGATTAACGGCTGCCCGATCGAGTT
AGTCGAGCCGGAGATCCTCCGCTTCAAGGCATACGAGCCAATTCTCTTGC
TCGGGCGACACCGCTTCGCCGGCGTGGACATGAGAATCCGCGTGAANNGC
GGGGGACACACGTCGCAGATCTACGCCAT
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