DN135096

Overview
NameDN135096
Unique NameDN135096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4631 contig Csv1_Contig4631:70..583. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2A_ARATH (Proteasome subunit beta type-2-A OS=Arabidopsis thaliana GN=PBD1 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 3.754e-71
Identity = 130/153 (84.97%), Postives = 142/153 (92.81%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVE 512
            MECVFGLVG+GF I+ ADTSAVHSIL+ K+NEDKIMVLDSHKL+A SGEPGDRVQFTE++QKNVSLY+FRNGIPLTTAAAANFTRGELATALRK+PY VNIL+AGYD E+G SLYYIDYIATLHKVDK AFGYGSYFSLS MDRH+ S MSVE
Sbjct:    1 MECVFGLVGNGFAIVAADTSAVHSILLHKNNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQKNVSLYKFRNGIPLTTAAAANFTRGELATALRKNPYSVNILMAGYDDESGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYRSDMSVE 153          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2B_ARATH (Proteasome subunit beta type-2-B OS=Arabidopsis thaliana GN=PBD2 PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.427e-70
Identity = 129/153 (84.31%), Postives = 140/153 (91.50%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVE 512
            MECVFGLVG+GF I+ ADTSAVHSIL+ K+ EDKIM LDSHKL+A SGEPGDRVQFTE++QKNVSLYQFRNGIPL+TAAAANFTRGELATALRK+PY VNIL+AGYDKE G SLYYIDYIATLHKVDK AFGYGSYFSLS MDRH+ S MSVE
Sbjct:    1 MECVFGLVGNGFAIVAADTSAVHSILLHKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYVQKNVSLYQFRNGIPLSTAAAANFTRGELATALRKNPYSVNILMAGYDKEAGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYRSDMSVE 153          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2_ORYSJ (Proteasome subunit beta type-2 OS=Oryza sativa subsp. japonica GN=PBD1 PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 1.581e-61
Identity = 113/153 (73.86%), Postives = 130/153 (84.97%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVE 512
            MECV G+VG  F ++ ADTSAV SILV K++EDK+MVLDSHKL+  SGEPGDRVQFTEFIQKN+ LYQFRN IPL+TAA ANFTRGELATALRK+PY VN+LLAGYD + G SLYYIDYIAT HK++K AFGYGSYF LS+MD+ +   MSVE
Sbjct:    1 MECVIGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQKNLHLYQFRNNIPLSTAATANFTRGELATALRKNPYYVNVLLAGYDSDVGASLYYIDYIATFHKIEKGAFGYGSYFCLSLMDKLYRPDMSVE 153          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2_DICDI (Proteasome subunit beta type-2 OS=Dictyostelium discoideum GN=psmB2 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.624e-40
Identity = 78/156 (50.00%), Postives = 107/156 (68.59%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKET---GPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVE 512
            ME +      G  + +AD+S  HSI+ +K +EDKI+ +D HKL+  +GE GDRVQFTE+I KN+ LY  RN  P++T AAANF R ELAT++R  PY +N++LAGYDKE    G SLYY+DY+ +L K++    GY SYF L ++DRH    +S+E
Sbjct:    1 METLLAFKVKGGVLCLADSSVNHSIVKMKDDEDKILEIDGHKLLLSAGEAGDRVQFTEYISKNIKLYSLRNSYPMSTPAAANFIRNELATSIRSHPYSINLILAGYDKEVEDGGTSLYYMDYLGSLQKLNFGCHGYASYFLLGLLDRHHKCDLSLE 156          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2_NEUCR (Probable proteasome subunit beta type-2 OS=Neurospora crassa GN=15E6.60 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.152e-34
Identity = 74/154 (48.05%), Postives = 102/154 (66.23%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKET-GPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSV 509
            M  + G+ G  FTI+ A  +A+    +LK+++DK   L+ H L+A SGE GD VQF E+ Q N  LY  RNG  L+ +A ANF RGELAT+LR + PY VN+LL G D  T  PSLY++DY+A+L KV  AA GY  Y+ LS++D+H H  +++
Sbjct:    1 MYVLLGITGKDFTIIAASKAAMRGATILKASDDKTRSLNKHTLMAFSGEAGDTVQFAEYTQANAQLYSMRNGTDLSPSALANFVRGELATSLRSRKPYNVNLLLGGVDPITHKPSLYWLDYLASLAKVPYAAHGYAQYYCLSILDKHHHPDITL 154          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2_RAT (Proteasome subunit beta type-2 OS=Rattus norvegicus GN=Psmb2 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.260e-34
Identity = 72/154 (46.75%), Postives = 103/154 (66.88%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVE 512
            ME + G+ G  + ++ +D  A  +I+ +K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS++DR++   +S E
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRE 154          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2_MOUSE (Proteasome subunit beta type-2 OS=Mus musculus GN=Psmb2 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.260e-34
Identity = 72/154 (46.75%), Postives = 103/154 (66.88%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVE 512
            ME + G+ G  + ++ +D  A  +I+ +K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS++DR++   +S E
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRE 154          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2_HUMAN (Proteasome subunit beta type-2 OS=Homo sapiens GN=PSMB2 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.260e-34
Identity = 72/154 (46.75%), Postives = 103/154 (66.88%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVE 512
            ME + G+ G  + ++ +D  A  +I+ +K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS++DR++   +S E
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRE 154          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2_BOVIN (Proteasome subunit beta type-2 OS=Bos taurus GN=PSMB2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.068e-33
Identity = 72/154 (46.75%), Postives = 103/154 (66.88%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVE 512
            ME + G+ G  + ++ +D  A  +I+ +K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS++DR++   +S E
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADYLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRE 154          
BLAST of DN135096 vs. ExPASy Swiss-Prot
Match: PSB2_SCHPO (Probable proteasome subunit beta type-2 OS=Schizosaccharomyces pombe GN=SPAC31A2.04c PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.885e-30
Identity = 66/155 (42.58%), Postives = 100/155 (64.52%), Query Frame = 3
Query:   54 MECVFGLVGDGFTILVADTSAVHSILVLKSNEDKIMVLDSHKLIAGSGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVE 512
            ME +  + G  F +  + +SAV  I VLK ++DK  +L+SH L+   GE GD   F E+I  N+SLY  R+ + L+  A A+FTR +LAT+LR + PY VNILLAGY+   G P L+++DY+AT  +V  A  GY S++ LS+ DR++   ++++
Sbjct:    1 MESLLAVQGQDFVLTASSSSAVRGITVLKPDDDKSQILNSHNLMLYCGEAGDTTNFAEYIAANISLYTLRHNLNLSPEATASFTRKQLATSLRSRKPYQVNILLAGYETNLGKPELFWLDYLATCVRVPYACQGYSSFYCLSIFDRYYKPDLTID 155          
The following BLAST results are available for this feature:
BLAST of DN135096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PSB2A_ARATH3.754e-7184.97Proteasome subunit beta type-2-A OS=Arabidopsis th... [more]
PSB2B_ARATH1.427e-7084.31Proteasome subunit beta type-2-B OS=Arabidopsis th... [more]
PSB2_ORYSJ1.581e-6173.86Proteasome subunit beta type-2 OS=Oryza sativa sub... [more]
PSB2_DICDI2.624e-4050.00Proteasome subunit beta type-2 OS=Dictyostelium di... [more]
PSB2_NEUCR2.152e-3448.05Probable proteasome subunit beta type-2 OS=Neurosp... [more]
PSB2_RAT6.260e-3446.75Proteasome subunit beta type-2 OS=Rattus norvegicu... [more]
PSB2_MOUSE6.260e-3446.75Proteasome subunit beta type-2 OS=Mus musculus GN=... [more]
PSB2_HUMAN6.260e-3446.75Proteasome subunit beta type-2 OS=Homo sapiens GN=... [more]
PSB2_BOVIN1.068e-3346.75Proteasome subunit beta type-2 OS=Bos taurus GN=PS... [more]
PSB2_SCHPO1.885e-3042.58Probable proteasome subunit beta type-2 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionwca06b09 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06b09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135096 ID=DN135096; Name=DN135096; organism=Citrus sinensis; type=EST; length=514bp
GGGGAAAACAAAATCAAATCAAAACAGATCCGACAACANNNNAACAGTAA
GGAATGGAGTGCGTATTTGGTCTTGTCGGCGACGGCTTCACAATCTTAGT
GGCCGACACGTCGGCAGTCCACAGTATCTTGGTTCTTAAATCGAACGAGG
ACAAGATCATGGTCCTCGACTCTCACAAACTCATCGCCGGCAGTGGCGAA
CCCGGTGACCGTGTTCAATTTACGGAGTTCATTCAGAAGAATGTGTCGTT
GTATCAATTTCGTAACGGAATTCCATTGACTACTGCTGCGGCGGCGAACT
TTACCCGAGGAGAGCTTGCTACTGCTCTGAGAAAGAGCCCTTACATGGTT
AACATCCTTCTAGCTGGGTATGACAAGGAGACAGGACCATCTCTCTACTA
CATTGACTACATTGCAACCCTTCACAAAGTTGATAAGGCAGCTTTTGGTT
ATGGATCCTATTTTTCGCTCTCCATGATGGACCGACATTTCCACAGTGGC
ATGTCAGTTGAAGA
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