DN135089

Overview
NameDN135089
Unique NameDN135089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135089_ssr450 microsatellite DN135089_ssr450:450..459. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2589 contig Csv1_Contig2589:437..1013. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135089 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.783e-20
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  155 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 310
            TA C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of DN135089 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.783e-20
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  155 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 310
            TA C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of DN135089 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.775e-20
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 2
Query:  140 MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 310
            MAD STATC+DI+LA+ILPPLGVF KFGC  EFWICLLLT  GY+PGIIYAV+ ITK
Sbjct:    1 MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
BLAST of DN135089 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.363e-19
Identity = 41/53 (77.36%), Postives = 49/53 (92.45%), Query Frame = 2
Query:  152 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 310
            STAT V+I+LA+ILPPLGVFLKFGCK EFWICL+LT+ GY+PGI+YA+Y ITK
Sbjct:    2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
BLAST of DN135089 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.736e-19
Identity = 40/53 (75.47%), Postives = 49/53 (92.45%), Query Frame = 2
Query:  152 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 310
            STAT VDI++A++LPPLGVFL+FGC  EFWICL+LT+LGYIPGIIYA+Y +TK
Sbjct:    2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54          
BLAST of DN135089 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.727e-15
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 2
Query:  140 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 304
            MA G   T ++ILLA+ILPPLGVFL+FGC   EF ICLLLTILGY+PGIIYAVY +
Sbjct:    1 MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56          
BLAST of DN135089 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.727e-15
Identity = 34/51 (66.67%), Postives = 46/51 (90.20%), Query Frame = 2
Query:  152 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 304
            ++AT ++++LA+ILPP+GVFL++G   EFWICLLLT+LGYIPGIIYAVY +
Sbjct:    2 ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVL 52          
BLAST of DN135089 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:  155 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 304
            +AT ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of DN135089 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:  155 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 304
            +AT ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of DN135089 vs. ExPASy Swiss-Prot
Match: PMP3_DEBHA (Plasma membrane proteolipid 3 OS=Debaryomyces hansenii GN=PMP3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 2
Query:  161 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 310
            TC DI   ++A+ILPPLGVFL+ GC + FWI ++LTILGYIPGII+A+Y I K
Sbjct:    4 TCSDIFKIIIAIILPPLGVFLERGCASSFWINIVLTILGYIPGIIHALYVILK 56          
The following BLAST results are available for this feature:
BLAST of DN135089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
LTI6B_ORYSJ1.783e-2084.62Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI1.783e-2084.62Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
LTI6A_ORYSJ6.775e-2078.95Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
RCI2B_ARATH3.363e-1977.36Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
RCI2A_ARATH5.736e-1975.47Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
OSR8_ORYSJ1.727e-1571.43Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
LT02_HORVU1.727e-1566.67Low temperature-induced protein lt101.2 OS=Hordeum... [more]
LT01_HORVU1.909e-1468.00Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL1.909e-1468.00Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
PMP3_DEBHA1.787e-1264.15Plasma membrane proteolipid 3 OS=Debaryomyces hans... [more]

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Properties
Property NameValue
Genbank descriptionwca06a08 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06a08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135089 ID=DN135089; Name=DN135089; organism=Citrus sinensis; type=EST; length=579bp
GCCGGGGAAACAAAAANNNNAAGTACAAATANNNNANNNNGTTACTCAAA
ACCCTAAGCACTTCTTTAATCAAAGTTCTTGTTTTTTGACTCTAAATTTT
ATTTTATTCCATTTTACACTTTTTAAGAATCAATCAAAGATGGCAGATGG
AAGCACAGCAACATGCGTAGATATTCTCTTGGCTGTTATCTTGCCTCCTC
TTGGTGTCTTTCTCAAATTTGGTTGCAAGGCTGAGTTTTGGATCTGTTTG
CTCTTGACAATTCTGGGGTATATCCCTGGAATTATTTATGCTGTTTATGC
CATCACCAAGAAGTGATCTCTCGTCTTCATCTATTGAGAGATCCCAAGGG
CATCATGTGTTATGAGATCTTTTATTTACAACCGTTAGATGGGCAGCTCT
GATTTGATGTAGCCAGATGGGTTCTGATTCTTAATCAACTGGGGTGTGCG
TGTGTGTGTGGGAGAGAGCACTTGTTTCGTTTGTTAATCTTTATCGTTTT
CTTTTCTTTCATTTGTCCTTTTTAATGAATTTTAATTCAATATGTTGATC
TAGAAAAAAAAAAAAAAAAAAAAAAAAAA
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