DN135087

Overview
NameDN135087
Unique NameDN135087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135087_ssr412 microsatellite DN135087_ssr412:412..423. BLAST: Citrus ESTs to Prunus persica proteins V1
DN135087_ssr500 microsatellite DN135087_ssr500:500..511. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1336 contig Csv1_Contig1336:1056..1677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135087 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.945e-30
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = 2
Query:  125 TINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 349
            T N+     Y    IDCGGAC ARCRLSSRP LC+RACGTCCARCNCVPPGT+GNTE CPCYA++TTH  +RKCP
Sbjct:   30 TSNAISEAAYSYKKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of DN135087 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.544e-28
Identity = 54/73 (73.97%), Postives = 57/73 (78.08%), Query Frame = 2
Query:  131 NSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 349
            NS K  GY K  IDCG AC ARCRLS RP LCHRACGTCC RCNCVPPGT GN + C CYA++TTH GRRKCP
Sbjct:   27 NSQKKNGYAK-KIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of DN135087 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.033e-24
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  131 NSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 349
            +S  G G  K  IDCGG C+ RC  SSRPNLC RAC +CC RCNCVPPGTAGN  +CPCYA++TT  GR KCP
Sbjct:   29 DSQVGEGVVK--IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of DN135087 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.541e-23
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  122 HTINSSK-GTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 349
            H  + +K G G  K  IDCGG C+ RC  SSR  LC RAC +CC+RCNCVPPGT+GNT +CPCYA++TTH GR KCP
Sbjct:   25 HAADGAKVGEGVVK--IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of DN135087 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.014e-11
Identity = 32/71 (45.07%), Postives = 38/71 (53.52%), Query Frame = 2
Query:  137 SKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 349
            S+G  +P+   DC   C  RC  +S    C   C  CCA+C CVP GT GN + CPCY N  T  G  KCP
Sbjct:   45 SEGRLHPQ---DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of DN135087 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 28/60 (46.67%), Postives = 31/60 (51.67%), Query Frame = 2
Query:  170 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 349
            DC   C  RC  +S    C   C  CCA C CVP G  GN + CPCY N  T  G+ KCP
Sbjct:   37 DCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of DN135087 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.715e-11
Identity = 25/59 (42.37%), Postives = 31/59 (52.54%), Query Frame = 2
Query:  173 CGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 349
            C   C+ RC  +   + C + CG CC  C CVP GT GN   CPCY +     G+ KCP
Sbjct:   30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
The following BLAST results are available for this feature:
BLAST of DN135087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SNAK2_SOLTU4.945e-3072.00Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH3.544e-2873.97Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH9.033e-2465.75Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH1.541e-2362.34Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GAST1_SOLLC3.014e-1145.07Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC5.141e-1146.67Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
SNAK1_SOLTU6.715e-1142.37Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionwca06a03 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca06a03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135087 ID=DN135087; Name=DN135087; organism=Citrus sinensis; type=EST; length=622bp
GGGGGCACAAAGAAGNNNAGCAGACACTAAGCATAACTAATTGTAAGCCA
TGGCCATCTCCAAAGCTCTTATTGCTTCAGTCCTCCTCTCACTTGTTGTT
TTTCATCTCGTTGAAGCTGAGCATACGATTAACTCAAGCAAAGGAACTGG
TTATCCAAAACCATCAATTGACTGTGGAGGTGCATGCCAGGCCAGGTGCC
GATTATCGTCGAGGCCAAACCTGTGCCACAGGGCATGTGGTACCTGCTGC
GCCCGCTGCAATTGTGTTCCTCCAGGCACTGCAGGCAACACTGAGGTCTG
CCCTTGCTACGCCAATATGACCACCCACCACGGCAGACGCAAGTGCCCTT
GAAATATTTTAAGTTGAAACGACGTCGTCTACTTCTTAATTAATTTTTTT
GGAGCTTCTATTCTCTCTCTCTCTATGTATAAATATGTGCGTGTGCGTGT
GCGTGTGTTGCCTGTGGCCAGAAAAACAGAGTTGATCCATATTCCCATGA
ATAAATAAATAAATCCATTTCATGTTACTTATTGTGGATACATAAGTTTC
CAGAGAATAATAATAAGAGGCTTCTTCTCCTTTTAAATTTACCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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