DN135074

Overview
NameDN135074
Unique NameDN135074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135074_ssr47 microsatellite DN135074_ssr47:47..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2305 contig Csv1_Contig2305:3..536. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135074 vs. ExPASy Swiss-Prot
Match: ERG1_PANGI (Squalene monooxygenase OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.838e-24
Identity = 57/73 (78.08%), Postives = 59/73 (80.82%), Query Frame = 2
Query:  314 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL 532
            DVI          LA TLA DGRRVHVIERDL+E DRIVGELLQPGGYLKLIELGLEDCV +IDAQRVFGYAL
Sbjct:   76 DVIIVGAGVAGSALAYTLANDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIELGLEDCVNEIDAQRVFGYAL 148          
BLAST of DN135074 vs. ExPASy Swiss-Prot
Match: ERG12_ARATH (Squalene monooxygenase 1,2 OS=Arabidopsis thaliana GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.935e-17
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  311 ADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL 532
            ADVI          LA  LAKDGRRVHVIERD+ EP+R++GE +QPGG L L +LGL+DC+E IDAQ+  G A+
Sbjct:   46 ADVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPERMMGEFMQPGGRLMLSKLGLQDCLEDIDAQKATGLAV 119          
BLAST of DN135074 vs. ExPASy Swiss-Prot
Match: ERG11_ARATH (Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.012e-16
Identity = 44/70 (62.86%), Postives = 50/70 (71.43%), Query Frame = 2
Query:  314 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFG 523
            DVI          LA  LAKDGRRVHVIERDL EP+RI+GE +QPGG L L +LGLEDC+E IDAQ+  G
Sbjct:   47 DVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCLEGIDAQKATG 116          
BLAST of DN135074 vs. ExPASy Swiss-Prot
Match: ERG11_BRANA (Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.322e-16
Identity = 48/96 (50.00%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  245 DNGADSLRKTPTTALNGECPFDADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL 532
            +N    + K P  A       DADVI          LA  LAKDGRRVHVIERD+ EP R++GE +QPGG L L +LGLEDC+E ID Q   G A+
Sbjct:   26 NNRRKKVAKLPDAATEVRRDGDADVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLLLSKLGLEDCLEGIDEQIATGLAV 121          
BLAST of DN135074 vs. ExPASy Swiss-Prot
Match: ERG12_BRANA (Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.119e-15
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  314 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL 532
            DVI          LA  LAKDGRRVHVIERD+ EP R++GE +QPGG L L +LGL+DC+E+IDAQ+  G  L
Sbjct:   50 DVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLMLSKLGLQDCLEEIDAQKSTGIRL 122          
BLAST of DN135074 vs. ExPASy Swiss-Prot
Match: ERG1_RAT (Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.257e-15
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  230 RSKSEDNGADSLRKTPTTALNGECPFDADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL 532
            R + E N +++      T+++     D +VI          LA  L++DGR V VIERDL EPDRI+GE LQPGGY  L ELGL D VE ++A  + GY +
Sbjct:   96 RRRKEVNLSETTLTGAATSVSTSSVTDPEVIIIGSGVLGSALATVLSRDGRTVTVIERDLKEPDRILGECLQPGGYRVLRELGLGDTVESLNAHHIHGYVI 196          
BLAST of DN135074 vs. ExPASy Swiss-Prot
Match: ERG13_ARATH (Squalene monooxygenase 2 OS=Arabidopsis thaliana GN=SQP2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.257e-15
Identity = 42/73 (57.53%), Postives = 47/73 (64.38%), Query Frame = 2
Query:  314 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL 532
            DVI          LA  LAKDGRRVHVIERDL EP R +GEL+Q GG   L +LGLEDC+E IDAQ     A+
Sbjct:   45 DVIIVGAGVAGASLAYALAKDGRRVHVIERDLKEPQRFMGELMQAGGRFMLAQLGLEDCLEDIDAQEAKSLAI 117          
BLAST of DN135074 vs. ExPASy Swiss-Prot
Match: ERG1_MOUSE (Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.255e-15
Identity = 42/73 (57.53%), Postives = 49/73 (67.12%), Query Frame = 2
Query:  308 DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGY 526
            D +VI          LA  L++DGR+V VIERDL EPDRIVGELLQPGGY  L ELGL D VE ++A  + GY
Sbjct:  121 DPEVIIVGSGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGELLQPGGYRVLQELGLGDTVEGLNAHHIHGY 193          
BLAST of DN135074 vs. ExPASy Swiss-Prot
Match: ERG1_HUMAN (Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.757e-14
Identity = 42/75 (56.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  308 DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL 532
            D +VI          L   L++DGR+V VIERDL EPDRIVGE LQPGGY  L +LGL D VE +DAQ V GY +
Sbjct:  123 DPEVIIVGAGVLGSALVAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTVEGLDAQVVNGYMI 197          
BLAST of DN135074 vs. ExPASy Swiss-Prot
Match: ERG1_SCHPO (Probable squalene monooxygenase OS=Schizosaccharomyces pombe GN=SPBC713.12 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.199e-13
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  308 DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL 532
            DAD+I          L   L + GR+V V+ERD+SEPDRIVGELLQPGG   L ++G+ D VE ID Q   GY +
Sbjct:    5 DADIIIIGAGITGCALGAALGRQGRKVLVLERDMSEPDRIVGELLQPGGIEALEKIGIADAVEGIDGQWTSGYQI 79          
The following BLAST results are available for this feature:
BLAST of DN135074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ERG1_PANGI3.838e-2478.08Squalene monooxygenase OS=Panax ginseng PE=2 SV=1[more]
ERG12_ARATH5.935e-1758.11Squalene monooxygenase 1,2 OS=Arabidopsis thaliana... [more]
ERG11_ARATH1.012e-1662.86Squalene monooxygenase 1,1 OS=Arabidopsis thaliana... [more]
ERG11_BRANA1.322e-1650.00Squalene monooxygenase 1,1 OS=Brassica napus GN=SQ... [more]
ERG12_BRANA1.119e-1557.53Squalene monooxygenase 1,2 OS=Brassica napus GN=SQ... [more]
ERG1_RAT3.257e-1543.56Squalene monooxygenase OS=Rattus norvegicus GN=Sql... [more]
ERG13_ARATH3.257e-1557.53Squalene monooxygenase 2 OS=Arabidopsis thaliana G... [more]
ERG1_MOUSE7.255e-1557.53Squalene monooxygenase OS=Mus musculus GN=Sqle PE=... [more]
ERG1_HUMAN2.757e-1456.00Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=... [more]
ERG1_SCHPO5.199e-1350.67Probable squalene monooxygenase OS=Schizosaccharom... [more]
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Properties
Property NameValue
Genbank descriptionwca05g11 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05g11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135074 ID=DN135074; Name=DN135074; organism=Citrus sinensis; type=EST; length=534bp
CGCGCCGGGGGAGGCAACAGAAACGGAAGANNNAANNNNAAACAAAAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGACGTCGTCTGGTTTCGGTTTCGGT
TTCTGTCCGGACCGGTGGAAAAGAAAAGAAATGGCGGATCAGTACACGTG
GGGATTGATCTTGGGCGCTGCATTGGGGCTGGTGGCCGTTTATAACCTGG
GCCTTCTTGCTTTGTATAATCTTGTCATGAGGAGCAAGAGCGAGGACAAC
GGTGCAGATTCCTTACGCAAGACTCCAACTACGGCTCTAAATGGCGAATG
CCCCTTCGATGCTGACGTCATCGTCGTCGGCGCCGGCGTCGCTGGCGCTG
CTCTCGCTAACACTCTTGCCAAGGATGGTCGTCGAGTGCATGTGATTGAA
AGGGATTTGTCGGAGCCTGACCGAATTGTTGGTGAATTGCTGCAACCCGG
GGGCTACCTCAAATTAATTGAGTTAGGACTTGAAGATTGTGTGGAGCAAA
TTGATGCTCAGCGCGTTTTTGGTTATGCCCTTTT
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