DN134774

Overview
NameDN134774
Unique NameDN134774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13291 contig Csv1_Contig13291:85..701. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DN134774 vs. ExPASy Swiss-Prot
Match: Y8111_DICDI (DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum GN=DDB_G0278111 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  162 QKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 452
            Q+ QE  ++EA+ERRQ +L QIL+ +ARE  +RI +VKPEK+R +ED+I+R+AQ GQ+ E+V + +LISLLE                +R  +EDDD
Sbjct:   24 QQRQEAQRQEANERRQGILIQILTPDARERLSRITIVKPEKSRQIEDLIIRAAQTGQLTERVDDAKLISLLE---QLSEKTKKTTITMKRRTIEDDD 117          
BLAST of DN134774 vs. ExPASy Swiss-Prot
Match: PDCD5_PONAB (Programmed cell death protein 5 OS=Pongo abelii GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 1.867e-13
Identity = 35/95 (36.84%), Postives = 55/95 (57.89%), Query Frame = 3
Query:  168 AQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 452
            AQ++AK    E R  +L+Q+L   AR   + +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+               RR+ +  D+D
Sbjct:   28 AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122          

HSP 2 Score: 28.8758 bits (63), Expect = 1.867e-13
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:   64 MADPELEAIRQRRMQELMAQQXRXG 138
            MAD ELEA+R++R+ EL A+    G
Sbjct:    1 MADEELEALRRQRLAELQAKHGDPG 25          
BLAST of DN134774 vs. ExPASy Swiss-Prot
Match: PDCD5_HUMAN (Programmed cell death protein 5 OS=Homo sapiens GN=PDCD5 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 1.867e-13
Identity = 35/95 (36.84%), Postives = 55/95 (57.89%), Query Frame = 3
Query:  168 AQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 452
            AQ++AK    E R  +L+Q+L   AR   + +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+               RR+ +  D+D
Sbjct:   28 AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122          

HSP 2 Score: 28.8758 bits (63), Expect = 1.867e-13
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:   64 MADPELEAIRQRRMQELMAQQXRXG 138
            MAD ELEA+R++R+ EL A+    G
Sbjct:    1 MADEELEALRRQRLAELQAKHGDPG 25          
BLAST of DN134774 vs. ExPASy Swiss-Prot
Match: PDCD5_MOUSE (Programmed cell death protein 5 OS=Mus musculus GN=Pdcd5 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 3.152e-13
Identity = 35/95 (36.84%), Postives = 55/95 (57.89%), Query Frame = 3
Query:  168 AQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 452
            AQ++AK+   E R  +L+Q+L   AR   + +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE               RR+ +  D+D
Sbjct:   28 AQQEAKQREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDED 122          

HSP 2 Score: 28.8758 bits (63), Expect = 3.152e-13
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:   64 MADPELEAIRQRRMQELMAQQXRXG 138
            MAD ELEA+R++R+ EL A+    G
Sbjct:    1 MADEELEALRKQRLAELQAKHGDPG 25          
BLAST of DN134774 vs. ExPASy Swiss-Prot
Match: YF69_SCHPO (Uncharacterized protein C23C4.09c OS=Schizosaccharomyces pombe GN=SPAC23C4.09c PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 43/115 (37.39%), Postives = 60/115 (52.17%), Query Frame = 3
Query:  114 HG--PTXXXXSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 452
            HG  P+       +++Q Q+ Q       DE RQ +LSQIL   AR+   RIALV+ ++A  VE+++LR A+ GQI  K+SE  LI LLE                 R V +D+D
Sbjct:   20 HGSAPSNIASGPSSNQQQQEVQ-------DEMRQNLLSQILEHPARDRLRRIALVRKDRAEAVEELLLRMAKTGQISHKISEPELIELLEKISGEVSKRNETKIVINRRVQDDED 127          
The following BLAST results are available for this feature:
BLAST of DN134774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y8111_DICDI5.196e-1646.39DNA-binding protein DDB_G0278111 OS=Dictyostelium ... [more]
PDCD5_PONAB1.867e-1336.84Programmed cell death protein 5 OS=Pongo abelii GN... [more]
PDCD5_HUMAN1.867e-1336.84Programmed cell death protein 5 OS=Homo sapiens GN... [more]
PDCD5_MOUSE3.152e-1336.84Programmed cell death protein 5 OS=Mus musculus GN... [more]
YF69_SCHPO5.033e-1137.39Uncharacterized protein C23C4.09c OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionwca01b05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01b05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134774 ID=DN134774; Name=DN134774; organism=Citrus sinensis; type=EST; length=619bp
GGGAAGGAAGCAGAAACAGAGTTCAGAGTAGGCAGCGTTTGCTCATCGAT
CCATTCAAATCAAATGGCTGACCCTGAACTAGAAGCAATTAGACAAAGAA
GAATGCAAGAGCTCATGGCCCAACAANNNCGNNNNGGAGTCAACAAAATT
CTGAGCAGCATCAGAAAGCTCAGGAAGATGCCAAGAGGGAGGCAGATGAA
CGGAGACAAATGATGCTTAGCCAGATTTTGTCAACCGAAGCACGTGAAAG
TTTTGCTCGAATTGCTTTGGTGAAACCCGAGAAGGCTAGAGGTGTTGAGG
ACATTATATTGAGATCTGCCCAAATGGGTCAGATAGTTGAGAAGGTTTCT
GAAGAGAGGCTCATATCATTGCTGGAACAGATTAACACCCAAACCACCAA
ACAGACCAAAGTCACAATCCAAAGGCGCCGGAGTGTTTTGGAAGATGATG
ATTAACCTTGTGTAATTTCTGGTCATCATGGTGTGATACGCAATGCTATT
CATGGTTATTGAAATTATGATGTGCTTTTTCATTGTTATTGACGGTTCAC
CGTTTTGACATTATCTACAGGGTTTGTGTTATTTATACTCAAATCTTTTC
TATAGTTATGTATCGGTTA
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