CN185241

Overview
NameCN185241
Unique NameCN185241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8101 contig Csv1_Contig8101:486..1098. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185241 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.945e-25
Identity = 56/94 (59.57%), Postives = 67/94 (71.28%), Query Frame = -3 
Query:  330 GDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRSR 611
            GD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDIT GRP L  +IEE+NK+ AY  TK DP+ L+E  + R
Sbjct:  147 GDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240
[Close]
BLAST of CN185241 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica GN=GSTZ5 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.945e-25
Identity = 56/94 (59.57%), Postives = 67/94 (71.28%), Query Frame = -3 
Query:  330 GDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRSR 611
            GD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDIT GRP L  +IEE+NK+ AY  TK DP+ L+E  + R
Sbjct:  147 GDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240
[Close]
BLAST of CN185241 vs. ExPASy Swiss-Prot
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica GN=Os03g0283200 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = -3 
Query:  333 DPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRS 608
            D + +   A D +E AL KF DGPFFLGQFS VDIAY+  +ER QI+ S   KY+IT GRP L  +IEE+N+++AY  TK DP  L++  ++
Sbjct:  147 DLSAETVAALDKIEAALSKFGDGPFFLGQFSLVDIAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAKT 238
[Close]
BLAST of CN185241 vs. ExPASy Swiss-Prot
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = -3 
Query:  333 AFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRS 584
            A D LE  L KFDDGPFFLGQFS  D+AY+  +ER QI+ S    YDI  GRP L  +I+E+NK++AY  TK DP  L++  +S
Sbjct:  155 ALDKLEADLSKFDDGPFFLGQFSLADVAYVTILERVQIYYSHLRNYDIAQGRPNLQEFIDEMNKIEAYAQTKNDPLFLLDLAKS 238
The following BLAST results are available for this feature:
BLAST of CN185241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IN21B_ORYSJ7.945e-2559.57Protein IN2-1 homolog B OS=Oryza sativa subsp. jap... [more]
IN21B_ORYSI7.945e-2559.57Protein IN2-1 homolog B OS=Oryza sativa subsp. ind... [more]
IN21A_ORYSJ5.892e-2051.09Protein IN2-1 homolog A OS=Oryza sativa subsp. jap... [more]
IN21_MAIZE6.515e-1953.57Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185241 ID=CN185241; Name=CN185241; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTACCAAATAGCATCAATCTCTTATTAATGATAGC
ACAACATACAACGCTAAACAAACACTAATACTTTAAGATATAAACAAGAC
GACAGTCAACAAACATATAGGTACATATGAGATAGCATTCTGTCATACGA
GATATCAACAAGTCATCAACTCATTCAATATCCAGCAACGTACACAAGCT
CACATCGGCAAACAATATGTAATGCGTATAACGCGCAGCTTTATTATACG
AGATTTTACAAACCACGCCACCAACTGATTCAGTGCGCTTCTAAGACGAC
TGATTGCAGGTTCACTGCTTGGCCACGAAGCGGCTCCTGTAAAATTCAAC
GAGTTCTTTTGGATCTGCTTTTGTTGACTTGTAAGCATCGAGCTTGTTCA
ACTCCTCAATCCATGCTGCCAGTTTAGGCCTGCCTGCAGTGATGTCATAC
TTAAATTCTTCTGATAAGAAGATCTGGAATCTCTCAACAAATGGAATATA
GGCTATGTCCACCTGACTGAACTGTCCAAGGAAGAACGGGCCATCATCAA
ATTTATCAAGGGCCTTCTCTAAGTAATCAAAAGCAGGACCAGCTTGTTTT
GCTGGGTCTCCTT
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