CN185235

Overview
NameCN185235
Unique NameCN185235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4376 contig Csv1_Contig4376:280..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 7.053e-55
Identity = 80/98 (81.63%), Postives = 85/98 (86.73%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQPAFDKK FVTYMKRFIKL  PKL EE+QE FKKNIEGATKFLLSKLSDLQFFVGE + D+G LVFA ++ G TDPTFLY A ALKEVKC
Sbjct:   71 VDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168          

HSP 2 Score: 77.411 bits (189), Expect = 7.053e-55
Identity = 39/58 (67.24%), Postives = 41/58 (70.69%), Query Frame = -3
Query:  301 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPSXXXXXXXXXXXXXXVKVVDM 474
            LLSD FPYKEI NGILWEVEGKW VQGAVDVD+GANPS              VKVVD+
Sbjct:   13 LLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDI 70          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 8.340e-53
Identity = 75/98 (76.53%), Postives = 85/98 (86.73%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQPAFDKK FVT+MKR+IK   PKL  E+QE+FKK+IEGATKFLLSKLSDLQFFVGE + D+GCLVFA +K+G TDPTFLY A  LKE+KC
Sbjct:   71 VDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168          

HSP 2 Score: 73.9442 bits (180), Expect = 8.340e-53
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = -3
Query:  301 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPSXXXXXXXXXXXXXXVKVVDM 474
            LLSD FPYKEI NG+LWEVEGKW +QGAV+VD+GANPS              VKVVD+
Sbjct:   13 LLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGVDDQAVKVVDI 70          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.284e-50
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQPAFDKK FVT+MKRFIK   PKL  E+QE+FKK+IEGATK+LLSK+ D QFFVGE + D+ CLVFA +K+G  DPTFLY A ALKEVKC
Sbjct:   71 VDTFRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168          

HSP 2 Score: 73.1738 bits (178), Expect = 1.284e-50
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = -3
Query:  301 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPSXXXXXXXXXXXXXXVKVVDM 474
            LLSD F YKEIENG+LWEVEGKW V+GAVDVD+GANPS              VKVVD+
Sbjct:   13 LLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDAAVKVVDI 70          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.284e-50
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQP  DKK F+ Y+K+FIKL  PKL  E+QE FKKNIEGATKFLL KL D +FFVGE + D+ C+VFA ++EG TDPTFLY+A ALKEVKC
Sbjct:   71 VDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168          

HSP 2 Score: 76.6406 bits (187), Expect = 1.284e-50
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = -3
Query:  301 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPSXXXXXXXXXXXXXXVKVVDM 474
            LLSD FPYKE+ENG++WEVEGKW VQGAVDVD+GANPS              VKVVD+
Sbjct:   13 LLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDI 70          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.843e-50
Identity = 73/98 (74.49%), Postives = 81/98 (82.65%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQP FDKK FVT++KR+IKL  PKL  E+QE FKKNIEGATKFLLSKLSDLQFFVGE + D+  LVFA +KEG TDP F+Y A  LKEVKC
Sbjct:   73 VDTFRLQEQPPFDKKQFVTWVKRYIKLLTPKLEGEQQETFKKNIEGATKFLLSKLSDLQFFVGESMGDDTSLVFASYKEGATDPIFIYFAHGLKEVKC 170          

HSP 2 Score: 74.7146 bits (182), Expect = 2.843e-50
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = -3
Query:  361 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPS 474
            LLSD FPYKEI+NG+LWEV+GKW VQGAVDVD+GANPS
Sbjct:   13 LLSDSFPYKEIQNGVLWEVDGKWVVQGAVDVDIGANPS 50          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.818e-49
Identity = 70/98 (71.43%), Postives = 79/98 (80.61%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQP FDKK FVT+MKR+IK    KL  E+QE FKKNIEGATK+LL KL DLQFFVGE + D+G LVFA +K+G TDPTFLY +  LKEVKC
Sbjct:   71 VDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168          

HSP 2 Score: 76.6406 bits (187), Expect = 1.818e-49
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = -3
Query:  301 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPSXXXXXXXXXXXXXXVKVVDM 474
            LLSD FPY+EIENGILWEV+GKW VQGA+DVD+GANPS              VKVVD+
Sbjct:   13 LLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGVDDQAVKVVDI 70          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.026e-49
Identity = 71/103 (68.93%), Postives = 80/103 (77.67%), Query Frame = -1
Query:    6 RWLTCVDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 314
            R +  VDTFRLQEQPAFDKK FVT+MKR+IK   PKL  E QE FKKNIE ATKFLL K+ DLQFFVGE + D+G LVFA +KEG  DP FLY+A  LKE+KC
Sbjct:   66 RVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLEGETQEAFKKNIEAATKFLLQKIKDLQFFVGESMHDDGALVFAYYKEGSADPPFLYIAPGLKEIKC 168          

HSP 2 Score: 74.3294 bits (181), Expect = 4.026e-49
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = -3
Query:  301 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPSXXXXXXXXXXXXXXVKVVDM 474
            LLSD FPYKE+ENG+LWEV+GKW VQGAVDV++GANPS              V+VVD+
Sbjct:   13 LLSDSFPYKEVENGVLWEVQGKWVVQGAVDVNIGANPSAEGGCEDEGVDDQAVRVVDI 70          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 8.916e-49
Identity = 70/98 (71.43%), Postives = 78/98 (79.59%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQPAFDKK FVTY+KR+IK   PKL  E QE FKKNIE ATKFLLSKL D QFFVGE + D+  LVFA +K+G  DPTFLY+A  LKE+KC
Sbjct:   71 VDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168          

HSP 2 Score: 73.9442 bits (180), Expect = 8.916e-49
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = -3
Query:  301 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPSXXXXXXXXXXXXXXVKVVDM 474
            LLSD FPYKEI+NG+LWEV+GKW VQGAVDV++GANPS              VKVVD+
Sbjct:   13 LLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVKVVDI 70          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 7.426e-48
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQP +DKK F+ Y+K++IKL  PKL EE Q +FKK IEGATKFLL +LSD QFFVGE + D+  LVFA +KEG T+PTFLY A  LKEVKC
Sbjct:   71 VDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168          

HSP 2 Score: 73.1738 bits (178), Expect = 7.426e-48
Identity = 36/58 (62.07%), Postives = 39/58 (67.24%), Query Frame = -3
Query:  301 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPSXXXXXXXXXXXXXXVKVVDM 474
            LLSD FPYKEIENGILWEVEGKW   GAVDV++GANPS               KVVD+
Sbjct:   13 LLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGVDDSTQKVVDI 70          
BLAST of CN185235 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.644e-47
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = -1
Query:    6 VDTFRLQEQPAFDKKPFVTYMKRFIKLPPPKLGEERQEIFKKNIEGATKFLLSKLSDLQFFVGERLPDEGCLVFA*HKEGGTDPTFLYMAEALKEVKC 299
            VDTFRLQEQP FDKK F+ ++KR+IK    KL EERQ  FKKN+EGA K L+SKLSDLQFFVGE + D+G +VFA +K+G TDPTFLY A+ LKEVKC
Sbjct:   70 VDTFRLQEQPPFDKKQFLGFIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC 167          

HSP 2 Score: 73.559 bits (179), Expect = 1.644e-47
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = -3
Query:  361 LLSDCFPYKEIENGILWEVEGKWFVQGAVDVDMGANPS 474
            LLSD FPYKE+ NG+LWEVEGKW VQGAVDVD+GANPS
Sbjct:   13 LLSDSFPYKELYNGVLWEVEGKWVVQGAVDVDIGANPS 50          
The following BLAST results are available for this feature:
BLAST of CN185235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TCTP_HEVBR7.053e-5581.63Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV8.340e-5376.53Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN1.284e-5073.47Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA1.284e-5070.41Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN2.843e-5074.49Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ1.818e-4971.43Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC4.026e-4968.93Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU8.916e-4971.43Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH7.426e-4868.37Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ1.644e-4768.37Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185235 ID=CN185235; Name=CN185235; organism=Citrus sinensis; type=EST; length=476bp
GCTTAGCACTTCACCTCCTTCAAAGCTTCCGCCATATACAAAAATGTTGG
GTCGGTCCCACCTTCCTTGTGCTAAGCAAAGACAAGACAGCCTTCATCAG
GCAAGCGCTCCCCGACAAAGAATTGAAGGTCACTGAGCTTCGAGAGCAAG
AACTTGGTCGCTCCCTCAATATTCTTCTTAAATATCTCCTGCCTCTCCTC
ACCCAGCTTGGGGGGCGGCAACTTGATGAATCTCTTCATGTATGTTACAA
ACGGCTTCTTGTCAAAAGCGGGTTGCTCCTGTAGCCTGAATGTGTCGACG
CATGTCAACCACCTTCACGGCTTGGTCATCAACACCCTCATCCTCATCAG
CTCCTTCGGCAGAGGGATTTGCCCCCATGTCAACATCAACGGCTCCTTGG
ACAAACCACTTTCCCTCCACTTCCCACAGAATCCCATTCTCAATTTCCTT
GTAGGGAAAACAATCGGAGAGAAGCT
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