DC887266

Overview
NameDC887266
Unique NameDC887266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5593 contig Csv1_Contig5593:1..554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 5.965e-47
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = -3
Query:  196 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 471
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_ORYSJ (60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.790e-47
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = -3
Query:  196 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 471
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.595e-46
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = -3
Query:  199 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 471
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.469e-45
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = -3
Query:  196 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 471
            MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct:    1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.523e-45
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = -3
Query:  199 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 471
            M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_BRARA (60S ribosomal protein L37a OS=Brassica rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.346e-43
Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = -3
Query:  199 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS-TIRRLREQTE 471
            M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS TIRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_OSTLU (60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) GN=RPL37a PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.875e-38
Identity = 73/91 (80.22%), Postives = 79/91 (86.81%), Query Frame = -3
Query:  199 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 471
            M KRTKK GIVGKYGTRYGASLRK +KK EVSQHSK+FC+FCGKY +KRKAVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKQEVSQHSKFFCDFCGKYGMKRKAVGIWSCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_OSTTA (60S ribosomal protein L37a OS=Ostreococcus tauri GN=RPL37a PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.281e-37
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = -3
Query:  199 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 471
            M KRTKK GIVGKYGTRYGASLRK +KK EVSQHSK+FC+FCGKY +KR+AVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKTEVSQHSKFFCDFCGKYGMKRQAVGIWCCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_CRYST (60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.167e-34
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = -3
Query:  196 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 471
            M KRTKK GIVGKYGTRYGASLRK +KKME++QHSKY C+FCGK A+KR+AVGIWGCK C KV AGGA+  +T +AVTVRS +RRLRE  ES
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRRLREMKES 92          
BLAST of DC887266 vs. ExPASy Swiss-Prot
Match: RL37A_DICDI (60S ribosomal protein L37a OS=Dictyostelium discoideum GN=rpl37A PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.150e-32
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = -3
Query:  208 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 471
            M KRTKK G+VGKYGTRYGASLRKQ+KKME++QH  Y C FCGK AV+R +VGIW C  C KV AGGA+T++TA+  TVRSTIRRLRE
Sbjct:    1 MAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCRKVLAGGAWTMSTAAGATVRSTIRRLRE 88          
The following BLAST results are available for this feature:
BLAST of DC887266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL37A_GOSHI5.965e-4798.9160S ribosomal protein L37a OS=Gossypium hirsutum G... [more]
RL37A_ORYSJ7.790e-4796.7460S ribosomal protein L37a OS=Oryza sativa subsp. ... [more]
RL37A_PSEMZ6.595e-4696.7060S ribosomal protein L37a OS=Pseudotsuga menziesi... [more]
R37A1_ARATH1.469e-4594.57Putative 60S ribosomal protein L37a-1 OS=Arabidops... [more]
R37A2_ARATH9.523e-4593.4160S ribosomal protein L37a-2 OS=Arabidopsis thalia... [more]
RL37A_BRARA2.346e-4392.3960S ribosomal protein L37a OS=Brassica rapa GN=RPL... [more]
RL37A_OSTLU3.875e-3880.2260S ribosomal protein L37a OS=Ostreococcus lucimar... [more]
RL37A_OSTTA3.281e-3779.1260S ribosomal protein L37a OS=Ostreococcus tauri G... [more]
RL37A_CRYST1.167e-3473.9160S ribosomal protein L37a OS=Cryptochiton steller... [more]
RL37A_DICDI4.150e-3271.5960S ribosomal protein L37a OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionDC887266 EIC Citrus sinensis cDNA clone EIC0110 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887266 ID=DC887266; Name=DC887266; organism=Citrus sinensis; type=EST; length=554bp
CTAGATAACTAATTTCATAGGAAAAATAGCGAATGAACATCTCAAGAGTC
AAAACACAGCCAAAAGTTTCATGTTCCAACAACCAATTGTTTTGCATCTA
GAAATAAAGCAACATCAAAAATGATTTAAGGTTGTATCCGAAACTAAAGA
TCAAACGACCTAAGACACGGGAGTAAGCCAATGGTGGCAAGCTCAGCTTT
CAGTTTGCTCCCTCAACCTACGGATTGTGCTCCTCACAGTCACAGCACTA
GCAGTGTTCAAAGTGTAGGCACCGCCTGCCTTGACTTTCCCACAGTCCTT
GCAGCCCCAAATGCCAACAGCTTTCCTCTTCACCGCATACTTCCCGCAAA
ATTCGCAGAAATATTTGCTATGCTGACTAACCTCCATCTTCTTAATTTGC
TTCCTCAAACTGGCACCATAACGGGTACCATACTTTCCAACGATTCCAGC
CTTCTTCGTACGCTTGGTCATTGTGGCGTTGGAGCGAAGGTCTGTAGCTC
TTCAACAAGCAGCGGCTGTTTGAGACGTANAGCGACAAAAGAAACCCTAA
CCCC
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