CN188918

Overview
NameCN188918
Unique NameCN188918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188918_ssr162 microsatellite CN188918_ssr162:162..173. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8214 contig Csv1_Contig8214:183..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: SIR_SYNY3 (Sulfite reductase [ferredoxin] OS=Synechocystis sp. (strain PCC 6803) GN=sir PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.548e-67
Identity = 117/220 (53.18%), Postives = 161/220 (73.18%), Query Frame = 1
Query:    7 EVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDI 654
            EV  AR  + +GTN  D  EPIYG QF+PRKFK++VTVP DNS+D+ T+DI +VV++D +GE +GFN+  GGG+GRTH  E TF R  + +GYV K+D+   VKAIV TQR+ G R +R+++RMKYL++ WG+EKFR  VE Y GK F+ F+ LP W ++ +LGWHEQGDG LF GL V+NGRI      ++K  LR++++++ L +R+T N NI+L DI
Sbjct:  198 EVKAARQKDLNGTNLNDPKEPIYGQQFMPRKFKISVTVPGDNSIDVYTHDISLVVITDRHGELRGFNVLAGGGLGRTHNKEETFARAADPIGYVSKDDVYDLVKAIVATQRDYGDRHNRRHARMKYLLADWGVEKFRKQVETYMGKPFQSFKPLPAWRYQDYLGWHEQGDGKLFFGLSVENGRIKDEGDFQLKTALRKVVDQFQLPLRLTANHNILLYDI 417          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: SIR_SYNE7 (Sulfite reductase [ferredoxin] OS=Synechococcus elongatus (strain PCC 7942) GN=sir PE=3 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.322e-59
Identity = 105/205 (51.22%), Postives = 149/205 (72.68%), Query Frame = 1
Query:   55 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDIR 657
            DS EP+Y  ++LPRKFK+AVTVP DNS+D+ T DIG+VV+ ++ GE +GFN+YVGGGMGRTH  E TF RL + LG+VP  DI  AV+AIV TQR+ G R +R+++RMKYLI  WGI KF+  VE  +GK   P R+LP + ++ +LGWHEQGDG  F GL + +GRI      +++  LREI+ ++ L + +T +Q++++ D++
Sbjct:  210 DSVEPLYSDRYLPRKFKIAVTVPGDNSIDLFTQDIGLVVIGNDRGELEGFNVYVGGGMGRTHNKEETFARLADPLGFVPAADIYAAVQAIVATQRDYGDRSNRRHARMKYLIHDWGIAKFKEAVESVFGKAIAPVRELPPFRYRDYLGWHEQGDGKWFLGLPITSGRIKDDGNWQLRSALREIVSRWQLPLLLTGSQDVLIYDVQ 414          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHEPC (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=cysI PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.121e-41
Identity = 91/208 (43.75%), Postives = 127/208 (61.06%), Query Frame = 1
Query:   43 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKT----LREIIEKYNLNVRITPNQNIILCDI 654
            T   ++ EP+YG  +LPRKFK+AV VP DN VD+ TND+G + V+ ENGE  GFNL  GGGMG TH    TFPRL +  G++  ED++   +A++  QR+ G R +RK SR+KY I   G EKF++ VE   G KFEP R++   +     GW E  DG     L +++GRI     +T    LREI + +  + R+T NQN+I+  +
Sbjct:  191 TTEDETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVA-ENGELVGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAVMTVQRDWGNRSNRKRSRLKYTIVDHGYEKFKAEVEARAGVKFEPKREVVIGDRGDRYGWVEGVDGKWHLTLFIESGRIKDLPGQTLQTGLREIAKIHKGDFRMTSNQNMIIAGV 397          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHESR (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella sp. (strain MR-7) GN=cysI PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.770e-41
Identity = 92/208 (44.23%), Postives = 128/208 (61.54%), Query Frame = 1
Query:   43 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDI 654
            T   ++ EP+YG  +LPRKFK+AV VP DN VD+ TND+G + V+ ENGE  GFNL  GGGMG TH    TFPRL +  G++  ED++   +A++  QR+ G R +RK SR+KY I   G EKF++ VE   G KFEP R +   +     GW E  DG     L +++GRI    GK  +T +REI + +  + R+T NQN+I+  +
Sbjct:  191 TTEDETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVA-ENGELVGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAVMTVQRDWGNRTNRKRSRLKYTIVDHGYEKFKAEVEARAGVKFEPKRDVVIGDRGDRYGWVEGVDGKWHLTLFIESGRIKDVPGKSLQTGMREIAKIHKGDFRMTSNQNMIIAGV 397          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHESM (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella sp. (strain MR-4) GN=cysI PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.770e-41
Identity = 92/208 (44.23%), Postives = 128/208 (61.54%), Query Frame = 1
Query:   43 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDI 654
            T   ++ EP+YG  +LPRKFK+AV VP DN VD+ TND+G + V+ ENGE  GFNL  GGGMG TH    TFPRL +  G++  ED++   +A++  QR+ G R +RK SR+KY I   G EKF++ VE   G KFEP R +   +     GW E  DG     L +++GRI    GK  +T +REI + +  + R+T NQN+I+  +
Sbjct:  191 TTEDETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVA-ENGELVGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAVMTVQRDWGNRTNRKRSRLKYTIVDHGYEKFKAEVEARAGVKFEPKRDVVIGDRGDRYGWVEGVDGKWHLTLFIESGRIKDVPGKSLQTGMREIAKIHKGDFRMTSNQNMIIAGV 397          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHESA (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella sp. (strain ANA-3) GN=cysI PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.770e-41
Identity = 92/208 (44.23%), Postives = 128/208 (61.54%), Query Frame = 1
Query:   43 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDI 654
            T   ++ EP+YG  +LPRKFK+AV VP DN VD+ TND+G + V+ ENGE  GFNL  GGGMG TH    TFPRL +  G++  ED++   +A++  QR+ G R +RK SR+KY I   G EKF++ VE   G KFEP R +   +     GW E  DG     L +++GRI    GK  +T +REI + +  + R+T NQN+I+  +
Sbjct:  191 TTEDETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVA-ENGELVGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAVMTVQRDWGNRTNRKRSRLKYTIVDHGYEKFKAEVEARAGVKFEPKRDVVIGDRGDRYGWVEGVDGKWHLTLFIESGRIKDVPGKSLQTGMREIAKIHKGDFRMTSNQNMIIAGV 397          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHESW (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella sp. (strain W3-18-1) GN=cysI PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.618e-41
Identity = 91/208 (43.75%), Postives = 126/208 (60.58%), Query Frame = 1
Query:   43 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKT----LREIIEKYNLNVRITPNQNIILCDI 654
            T   ++ EP+YG  +LPRKFK+AV VP DN VD+ TND+G + V+ ENGE  GFNL  GGGMG TH    TFPRL +  G++  ED++   +A++  QR+ G R +RK SR+KY I   G EKF++ VE   G KFEP R +   +     GW E  DG     L +++GRI     +T    LREI + +  + R+T NQN+I+  +
Sbjct:  191 TTEDETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVA-ENGELVGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAVMTVQRDWGNRSNRKRSRLKYTIVDHGYEKFKAEVEARAGVKFEPKRDVVIGDRGDRYGWVEGVDGKWHLTLFIESGRIKDLPGQTLQTGLREIAKIHKGDFRMTSNQNMIIAGV 397          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHEON (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella oneidensis GN=cysI PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.618e-41
Identity = 92/208 (44.23%), Postives = 128/208 (61.54%), Query Frame = 1
Query:   43 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDI 654
            T   ++ EP+YG  +LPRKFK+AV VP DN VD+ TND+G + V+ ENGE  GFNL  GGGMG TH    TFPRL +  G++  ED++   +A++  QR+ G R +RK SR+KY I   G EKF++ VE   G KFEP R +   +     GW E  DG     L +++GRI    GK  +T +REI + +  + R+T NQN+I+  +
Sbjct:  191 TTEDETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVA-ENGELVGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAVMTVQRDWGNRTNRKRSRLKYTIVDHGYEKFKAEVEVRAGVKFEPKRDVVIGDRGDRYGWVEGVDGKWHLTLFIESGRIKDMPGKSLQTGMREIAKIHKGDFRMTSNQNMIIAGV 397          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHELP (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=cysI PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.375e-40
Identity = 90/213 (42.25%), Postives = 125/213 (58.69%), Query Frame = 1
Query:   28 DNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDI 654
            D+    +  +  EP+YG  +LPRKFK+AV VP DN VD+ TND+G + V+ E+GE  GFN+  GGGMG TH    TFPRLG+  G++  ED L   +A++  QR+ G R DRK SR+KY I   G E F++ VEQ  G KFEP R++   +     GW +  D      L ++ GRI       ++  LREI   +  + R+T NQNII+  +
Sbjct:  186 DDKVAVSESEEVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVA-EDGELVGFNMVAGGGMGSTHGEVATFPRLGDDFGFIKAEDCLKFAEAVLKVQRDWGNRSDRKQSRLKYTIVKHGFEAFKAEVEQRAGVKFEPKREVVIGDRGDRYGWIKGVDNNWHLTLFIEGGRIKDLPGQPLQTGLREIALVHKGDFRMTANQNIIIAGV 397          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHEB9 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella baltica (strain OS195) GN=cysI PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.375e-40
Identity = 90/204 (44.12%), Postives = 125/204 (61.27%), Query Frame = 1
Query:   55 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKT----LREIIEKYNLNVRITPNQNIILCDI 654
            ++ EP+YG  +LPRKFK+AV VP DN VD+ TND+G + V+ ENGE  GFNL  GGGMG TH    TFPRL +  G++  ED++   +A++  QR+ G R +RK SR+KY I   G EKF++ VE   G KFEP R +   +     GW E  DG     L +++GRI     +T    LREI + +  + R+T NQN+I+  +
Sbjct:  195 ETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVA-ENGELVGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAVMTVQRDWGNRVNRKRSRLKYTIVDHGYEKFKAEVELRAGVKFEPKRDVVIGDRGDRYGWVEGVDGKWHLTLFIESGRIKDLPGQTLQTGLREIAKIHKGDFRMTSNQNMIIAGV 397          
The following BLAST results are available for this feature:
BLAST of CN188918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
SIR_SYNY36.548e-6753.18Sulfite reductase [ferredoxin] OS=Synechocystis sp... [more]
SIR_SYNE71.322e-5951.22Sulfite reductase [ferredoxin] OS=Synechococcus el... [more]
CYSI_SHEPC2.121e-4143.75Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHESR2.770e-4144.23Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHESM2.770e-4144.23Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHESA2.770e-4144.23Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHESW3.618e-4143.75Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHEON3.618e-4144.23Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHELP1.375e-4042.25Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHEB91.375e-4044.12Sulfite reductase [NADPH] hemoprotein beta-compone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188918 ID=CN188918; Name=CN188918; organism=Citrus sinensis; type=EST; length=714bp
GAGGCTGAAGTGGTAAAGGCACGTAATGATAATTCTCATGGAACAAATTT
CCCTGATTCTCCTGAGCCCATCTATGGGACTCAGTTCTTGCCAAGGAAGT
TCAAAGTTGCAGTAACGGTGCCAACAGATAACTCGGTGGATATTCTTACT
AATGATATTGGTGTTGTTGTTGTTTCTGATGAAAATGGGGAACCTCAGGG
ATTCAACTTATATGTTGGTGGTGGTATGGGAAGAACGCATCGGTTGGAAA
CCACATTTCCCCGTCTTGGAGAACAGTTGGGCTATGTGCCAAAAGAGGAC
ATTCTATATGCTGTGAAAGCTATTGTTGTTACCCAAAGAGAAAATGGGAG
GAGAGATGATCGCAAGTATAGTAGAATGAAATATTTGATCAGCTCCTGGG
GAATTGAGAAGTTTAGAAGTGTTGTTGAGCAATATTATGGAAAGAAATTT
GAGCCTTTCCGTCAATTGCCAGAGTGGGAATTTAAAAGTCATTTGGGATG
GCATGAGCAGGGGGATGGTGGTTTATTTTGTGGACTTCATGTTGATAATG
GTCGTATTGCGGGTAAAATGAAGAAGACATTGAGGGAGATAATAGAGAAG
TATAACTTAAATGTGCGGATCACTCCTAACCAGAATATTATCTTGTGTGA
CATTCGTAAAGCATGGAAGCGTCCCCATCACTACAGCTCTCGCACAGGGT
GGACTGCTGCTTTC
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