CN188904

Overview
NameCN188904
Unique NameCN188904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12271 contig Csv1_Contig12271:18..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCC11_ARATH (Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.080e-44
Identity = 82/109 (75.23%), Postives = 98/109 (89.91%), Query Frame = -2
Query:  346 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEERINAAFGKLALK 672
            VFHPYRSL +FLQDA +ND+NM  ++WGI+NDTYKMDLILVHPP+ IALACIYIASV+REKD TAWFE+L  DMN+VKNI+MEILDFYEN R ++EE++N+AF KLALK
Sbjct:  144 VFHPYRSLSEFLQDAALNDVNMNQITWGIVNDTYKMDLILVHPPYRIALACIYIASVHREKDITAWFEDLHEDMNLVKNIAMEILDFYENYRTITEEKVNSAFSKLALK 252          
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCC12_ARATH (Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.144e-44
Identity = 80/107 (74.77%), Postives = 96/107 (89.72%), Query Frame = -2
Query:  352 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEERINAAFGKLA 672
            VFHPYRSL +FLQD+G+ND +MTHL+WG++NDTY+MDLIL+HPP LI LACIYIASV++EKD   WFEEL VDMN+VKNI+MEILDFYEN RL +EER++AAF KLA
Sbjct:  144 VFHPYRSLPEFLQDSGINDTSMTHLTWGLVNDTYRMDLILIHPPFLITLACIYIASVHKEKDIKTWFEELSVDMNIVKNIAMEILDFYENHRLFTEERVHAAFNKLA 250          
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCC11_ORYSJ (Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.483e-35
Identity = 73/114 (64.04%), Postives = 89/114 (78.07%), Query Frame = -2
Query:  346 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYEN-----QRLVSEERINAAFGKLALK 672
            V+HPYR L+Q LQDAG+ D+  T  +WGI+NDTYKMDLIL+HPP++IALACIYIASV ++KD T WFEELRVDMN+VKNISMEILDFY+      QR + E++I     KL  K
Sbjct:  145 VYHPYRPLLQLLQDAGITDL--TQFAWGIVNDTYKMDLILIHPPYMIALACIYIASVLKDKDITLWFEELRVDMNIVKNISMEILDFYDTYKIDPQRGLPEDKIAPVMNKLPSK 256          
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCNC_RAT (Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.050e-20
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = -2
Query:  379 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEER 672
            V+HPYR L+Q++QD G  D+ +  L+W I+NDTY+ DL L++PP +IALAC+++A V ++KD   WF EL VDM  +  I   IL  YE  +   E +
Sbjct:  147 VYHPYRPLLQYVQDMGQEDV-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK 243          
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCNC_MOUSE (Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 7.050e-20
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = -2
Query:  379 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEER 672
            V+HPYR L+Q++QD G  D+ +  L+W I+NDTY+ DL L++PP +IALAC+++A V ++KD   WF EL VDM  +  I   IL  YE  +   E +
Sbjct:  152 VYHPYRPLLQYVQDMGQEDV-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK 248          
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCNC_XENTR (Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.203e-19
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = -2
Query:  379 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEER 672
            V+HPYR L+Q++QD G  D+ +  L+W I+NDTY+ DL L++PP +IALAC+++A V ++KD   WF EL VDM  +  I   IL  YE  +   E +
Sbjct:  152 VYHPYRPLLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK 248          
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCNC_XENLA (Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.203e-19
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = -2
Query:  379 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEER 672
            V+HPYR L+Q++QD G  D+ +  L+W I+NDTY+ DL L++PP +IALAC+++A V ++KD   WF EL VDM  +  I   IL  YE  +   E +
Sbjct:  152 VYHPYRPLLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK 248          
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCNC_HUMAN (Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.203e-19
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = -2
Query:  379 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEER 672
            V+HPYR L+Q++QD G  D+ +  L+W I+NDTY+ DL L++PP +IALAC+++A V ++KD   WF EL VDM  +  I   IL  YE  +   E +
Sbjct:  152 VYHPYRPLLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK 248          
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCNC_CHICK (Cyclin-C OS=Gallus gallus GN=CCNC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.203e-19
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = -2
Query:  379 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEER 672
            V+HPYR L+Q++QD G  D+ +  L+W I+NDTY+ DL L++PP +IALAC+++A V ++KD   WF EL VDM  +  I   IL  YE  +   E +
Sbjct:  152 VYHPYRPLLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK 248          
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCNC_BOVIN (Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.203e-19
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = -2
Query:  379 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEER 672
            V+HPYR L+Q++QD G  D+ +  L+W I+NDTY+ DL L++PP +IALAC+++A V ++KD   WF EL VDM  +  I   IL  YE  +   E +
Sbjct:  152 VYHPYRPLLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK 248          
The following BLAST results are available for this feature:
BLAST of CN188904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CCC11_ARATH1.080e-4475.23Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=... [more]
CCC12_ARATH9.144e-4474.77Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=... [more]
CCC11_ORYSJ3.483e-3564.04Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os0... [more]
CCNC_RAT7.050e-2045.92Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2[more]
CCNC_MOUSE7.050e-2045.92Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=3[more]
CCNC_XENTR1.203e-1945.92Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1[more]
CCNC_XENLA1.203e-1945.92Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1[more]
CCNC_HUMAN1.203e-1945.92Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2[more]
CCNC_CHICK1.203e-1945.92Cyclin-C OS=Gallus gallus GN=CCNC PE=3 SV=1[more]
CCNC_BOVIN1.203e-1945.92Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188904 ID=CN188904; Name=CN188904; organism=Citrus sinensis; type=EST; length=673bp
GAGGTTTTTTTTTTTTTTCTCGAATAAATCAATTTAGAAAGAAAACACAT
TGCCAGTACAAATCCCCTTTTCAGGCAGATTATAAAAGGTTATAAAAGTT
TATTAACACTAATTTTAACTACATTAACTGTTCCCCATATATGATATGAC
TGCCTTATGGAAAATGCCACCTGTACCAGGAGCGCATAGCTGTGCTCAAA
GGATTAGAGAATCAAAGGATTGATGATTTTATGATTGCCTACACCACGAC
CAGATACTTCTTCATATTAATCAATCATCCCTATTTTGGATACAACACAG
AGGGTGGTATCTAGCAAAGCAGCAGAGTCACCTAGCCATTTAAGTCTTCA
AAGCCAGTTTGCCGAAGGCAGCATTTATTCTCTCCTCACTAACCAGTCTT
TGGTTTTCATAAAAATCTAATATCTCCATTGAGATGTTTTTCACCACATT
CATATCAACACGAAGCTCTTCAAACCATGCGGTGTTATCTTTTTCTCTAT
ATACACTGGCAATATATATGCAAGCCAAAGCAATCAAATGTGGAGGATGT
ACAAGAATAAGGTCCATCTTATATGTGTCGTTCAGAATTCCCCAAGATAA
ATGGGTCATATTTATATCATTCATGCCAGCGTCCTGCAAAAACTGCACAA
GTGAACGGTAAGGATGGAATACA
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