CN188901 | Citrus Genome Database

Overview


Name	CN188901
Unique Name	CN188901
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	770

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7281	contig	Csv1_Contig7281:973..1741.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSJ (Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.635e-42
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377

HSP 2 Score: 55.8398 bits (133), Expect = 2.635e-42
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMFPGI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGTTMFPGI 311

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSI (Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.635e-42
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377

HSP 2 Score: 55.8398 bits (133), Expect = 2.635e-42
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMFPGI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGTTMFPGI 311

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.829e-42
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 377

HSP 2 Score: 55.8398 bits (133), Expect = 5.829e-42
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMFPGI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGTTMFPGI 311

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.829e-42
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377

HSP 2 Score: 56.9954 bits (136), Expect = 5.829e-42
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGGSTMFPGI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGSTMFPGI 311

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT12_SOLTU (Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.833e-42
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  289 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 357

HSP 2 Score: 55.8398 bits (133), Expect = 5.833e-42
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMFPGI
Sbjct:  265 MKCDVDIRKDLYGNIVLSGGTTMFPGI 291

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.290e-41
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377

HSP 2 Score: 56.9954 bits (136), Expect = 1.290e-41
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGGSTMFPGI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGSTMFPGI 311

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.853e-41
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377

HSP 2 Score: 55.8398 bits (133), Expect = 2.853e-41
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMFPGI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGTTMFPGI 311

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.853e-41
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377

HSP 2 Score: 55.8398 bits (133), Expect = 2.853e-41
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMFPGI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGTTMFPGI 311

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.853e-41
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377

HSP 2 Score: 55.8398 bits (133), Expect = 2.853e-41
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMFPGI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGTTMFPGI 311

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.853e-41
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377

HSP 2 Score: 55.8398 bits (133), Expect = 2.853e-41
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMFPGI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGTTMFPGI 311

The following BLAST results are available for this feature:

BLAST of CN188901 vs. ExPASy Swiss-Prot

BLAST of CN188901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398


Match Name	E-value	Identity	Description
ACT3_ORYSJ	2.635e-42	97.10	Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE...	[more]
ACT3_ORYSI	2.635e-42	97.10	Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2...	[more]
ACT13_SOLTU	5.829e-42	95.65	Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1	[more]
ACT7_ARATH	5.829e-42	95.65	Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1	[more]
ACT12_SOLTU	5.833e-42	95.65	Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100...	[more]
ACT3_PEA	1.290e-41	94.20	Actin-3 OS=Pisum sativum PE=2 SV=1	[more]
ACT_GOSHI	2.853e-41	94.20	Actin OS=Gossypium hirsutum PE=3 SV=1	[more]
ACT_COLSC	2.853e-41	94.20	Actin OS=Coleochaete scutata PE=2 SV=1	[more]
ACT1_ORYSJ	2.853e-41	94.20	Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE...	[more]
ACT1_ORYSI	2.853e-41	94.20	Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS06_0001A02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN188901 ID=CN188901; Name=CN188901; organism=Citrus sinensis; type=EST; length=770bp
GAGGTTTTTTTTGAAAGCTCTCAAACAAGTATTAAATATATTTTAATAAC
CAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAATAG
CTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTCAAA
TATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCATC
TCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAA
AAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGT
ACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACATC
AATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCAT
GTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATGG
AAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTTCCT
GTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCACA
TCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAACA
CTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTGG
AGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCCCATCACACTTCATGA