CX300694

Overview
NameCX300694
Unique NameCX300694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5791 contig Csv1_Contig5791:1341..1804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.280e-34
Identity = 69/81 (85.19%), Postives = 73/81 (90.12%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVRKVESNNFLSKD 243
            EKINVNGGA+AIGHPLG TGARCVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD  DEL N RKVE+   LSKD
Sbjct:  380 EKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDGVDELRNARKVEAQGLLSKD 460          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIK1_ARATH (3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.014e-31
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVRKV 216
            EKINVNGGA+AIGHPLG TGARCVATLLHEMKRRG+DCRFGV+SMCIG+GMGAAAVFERG   DELC+VRKV
Sbjct:  372 EKINVNGGAIAIGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGSGMGAAAVFERGGGVDELCDVRKV 443          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIK5_ARATH (3-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidopsis thaliana GN=KAT5 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.464e-30
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVR 210
            EK+NVNGGA+AIGHPLG TGARCVATLLHEMKRRG+DCRFGVISMCIGTGMGAAAVFERGD  D L N R
Sbjct:  381 EKVNVNGGAIAIGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGDSVDNLSNAR 450          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIKB_RAT (3-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus norvegicus GN=Acaa1b PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.167e-17
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 174
            EK+N  GGA+A+GHPLG TGAR V TLL+E+KRRGR   +GV+SMCIGTGMGAAAVFE
Sbjct:  364 EKVNPLGGAIALGHPLGCTGARQVVTLLNELKRRGRRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIKB_MOUSE (3-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musculus GN=Acaa1b PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.167e-17
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 174
            EK+N  GGA+A+GHPLG TGAR V TLL+E+KRRGR   +GV+SMCIGTGMGAAAVFE
Sbjct:  364 EKVNPLGGAIALGHPLGCTGARQVVTLLNELKRRGRRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.167e-17
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 174
            EK+N  GGA+A+GHPLG TGAR V TLL+E+KRRGR   +GV+SMCIGTGMGAAAVFE
Sbjct:  364 EKVNPLGGAIALGHPLGCTGARQVVTLLNELKRRGRRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.167e-17
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 174
            EK+N  GGA+A+GHPLG TGAR V TLL+E+KRRGR   +GV+SMCIGTGMGAAAVFE
Sbjct:  364 EKVNPLGGAIALGHPLGCTGARQVVTLLNELKRRGRRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIK_HUMAN (3-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapiens GN=ACAA1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.203e-16
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 174
            EK+N  GGA+A+GHPLG TGAR V TLL+E+KRRG+   +GV+SMCIGTGMGAAAVFE
Sbjct:  364 EKVNPLGGAVALGHPLGCTGARQVITLLNELKRRGKRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_BACSU (3-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fadA PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.972e-16
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 174
            EK+NVNGGA+A+GHPLG TG +   +L+HEMKRR    +FGV++MCIG GMGAA VFE
Sbjct:  334 EKVNVNGGAIALGHPLGCTGTKLTLSLIHEMKRRNE--QFGVVTMCIGGGMGAAGVFE 389          
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: THIL_RALEH (Acetyl-CoA acetyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=phbA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.590e-14
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    4 KINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            K+NVNGGA+AIGHP+G +G R + TLLHEMKR  RD + G+ S+CIG GMG A   ER
Sbjct:  337 KVNVNGGAIAIGHPIGASGCRILVTLLHEMKR--RDAKKGLASLCIGGGMGVALAVER 392          
The following BLAST results are available for this feature:
BLAST of CX300694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
THIK2_ARATH1.280e-3485.193-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]
THIK1_ARATH1.014e-3187.503-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidop... [more]
THIK5_ARATH1.464e-3087.143-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidop... [more]
THIKB_RAT3.167e-1774.143-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus n... [more]
THIKB_MOUSE3.167e-1774.143-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musc... [more]
THIKA_RAT3.167e-1774.143-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
THIKA_MOUSE3.167e-1774.143-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]
THIK_HUMAN1.203e-1672.413-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapie... [more]
FADA_BACSU5.972e-1665.523-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fa... [more]
THIL_RALEH5.590e-1462.07Acetyl-CoA acetyltransferase OS=Ralstonia eutropha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08001C02SK PhyRootSw1 Citrus sinensis cDNA clone C08001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300694 ID=CX300694; Name=CX300694; organism=Citrus sinensis; type=EST; length=464bp
GAAAAGATCAATGTGAATGGAGGTGCACTTGCCATTGGGCATCCTCTGGG
CACAACAGGTGCACGCTGTGTTGCAACTCTATTGCATGAGATGAAGAGGC
GAGGCAGAGACTGCCGCTTTGGAGTGATATCAATGTGCATAGGCACAGGA
ATGGGGGCAGCAGCTGTTTTCGAAAGAGGTGACTGTGCCGATGAGCTTTG
CAATGTCAGGAAAGTGGAAAGCAACAATTTCTTATCTAAGGATGTTCTGT
AGATTACCATTTGTCTGCTGCAGCATGTTCTTGTGGAACGATCATATTGT
GTTTGGAATCCGAGTATTTTTAATGAACAGTTATATGTAATAAGATTGCT
TTGTTGTGATCACAAAGCCGACCACAGGTCACACAGCTGTCTGTATCTTC
GGTTTTGATATGATTAATTTAAATATCGTCACACTTTATGAATGCCAAAA
AAAAAAAAAAAAAA
back to top