CX300692

Overview
NameCX300692
Unique NameCX300692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1278 contig Csv1_Contig1278:2..405. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.537e-62
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 2
Query:   41 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKK 403
            MVLKTELC+FSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIA EAVKK+RR TKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKK
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKK 121          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 8.839e-60
Identity = 112/121 (92.56%), Postives = 117/121 (96.69%), Query Frame = 2
Query:   41 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKK 403
            MVLKTELC+FSGAKIYPG+GIRFIR DSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQHKKD A EAVKK+RRATKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREIKERIKK
Sbjct:    1 MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKK 121          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 7.483e-59
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 2
Query:   41 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKK 403
            MVLKTELC+FSG KIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQHKKDI AEA KK+RR TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKK
Sbjct:    1 MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 121          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 3.714e-58
Identity = 109/121 (90.08%), Postives = 115/121 (95.04%), Query Frame = 2
Query:   41 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKK 403
            MVLKTELC+FSG KIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD A EAVK++RRATKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKK
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 121          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 4.850e-58
Identity = 109/121 (90.08%), Postives = 115/121 (95.04%), Query Frame = 2
Query:   41 MVLKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKK 403
            MVLKTELC+FSG KIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD A EAVK++RRATKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKK
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 121          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24B_SCHPO (60S ribosomal protein L24-B OS=Schizosaccharomyces pombe GN=rpl24b PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.522e-27
Identity = 57/116 (49.14%), Postives = 82/116 (70.69%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 394
            +K E+C FSG+K+YPG G  F+R D++VF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL++ K++
Sbjct:    1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDK 115          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24A_SCHPO (60S ribosomal protein L24-A OS=Schizosaccharomyces pombe GN=rpl24a PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.522e-27
Identity = 57/116 (49.14%), Postives = 82/116 (70.69%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 394
            +K E+C FSG+K+YPG G  F+R D++VF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL++ K++
Sbjct:    1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDK 115          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24_DEBHA (60S ribosomal protein L24 OS=Debaryomyces hansenii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.553e-27
Identity = 58/118 (49.15%), Postives = 82/118 (69.49%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 400
            +K EL  FSG KIYPG+G  F+R DS++F F +SK    FH R  P +++WT +YR+QHKK I+ E+ K++ R T K   R+IVGA+LE+I++RR++KP  R AAR+  L + KE  K
Sbjct:    1 MKVELDSFSGTKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRISWTVLYRRQHKKGISEESAKRRTRKTVK-NQRAIVGASLELIKERRSQKPSDRKAARDVKLAKDKEAKK 117          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24_ASHGO (60S ribosomal protein L24 OS=Ashbya gossypii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.197e-26
Identity = 57/118 (48.31%), Postives = 79/118 (66.95%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 400
            +K E+  FSGAKIYPG+G  F+R DS+VF F +SK    FH R  P ++ WT +YR+ HKK I  E  KK+ R T K   R++VGA+LE+I++RR+ KPE+R A R+   +  KE+ K
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKVFRFHSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAVVGASLELIKERRSLKPEIRKAKRDEKAKADKEKKK 117          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24_DICDI (60S ribosomal protein L24 OS=Dictyostelium discoideum GN=rpl24 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.896e-26
Identity = 57/118 (48.31%), Postives = 81/118 (68.64%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 400
            +KT LC +S  KIYP +G++F+R DS+VF F N+K +  F  ++ P  + W+ +YR+ +K      + KKK R TKK   R+IVGA+LEVIQ++R +KPEV+ AA E A REIKE+ K
Sbjct:    1 MKTSLCNYSEFKIYPARGMKFVRGDSKVFHFINTKVESLFFRKINPRDIRWSMVYRRIYKNTTTDVSAKKKARKTKK-VERNIVGASLEVIQQKRAQKPEVKQAAAEQAKREIKEKKK 117          
The following BLAST results are available for this feature:
BLAST of CX300692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RL24_PRUAV5.537e-6296.6960S ribosomal protein L24 OS=Prunus avium GN=RPL24... [more]
RL24_CICAR8.839e-6092.5660S ribosomal protein L24 OS=Cicer arietinum GN=RP... [more]
RL24_HORVU7.483e-5991.7460S ribosomal protein L24 OS=Hordeum vulgare GN=RP... [more]
RL242_ARATH3.714e-5890.0860S ribosomal protein L24-2 OS=Arabidopsis thalian... [more]
RL241_ARATH4.850e-5890.0860S ribosomal protein L24-1 OS=Arabidopsis thalian... [more]
RL24B_SCHPO1.522e-2749.1460S ribosomal protein L24-B OS=Schizosaccharomyces... [more]
RL24A_SCHPO1.522e-2749.1460S ribosomal protein L24-A OS=Schizosaccharomyces... [more]
RL24_DEBHA7.553e-2749.1560S ribosomal protein L24 OS=Debaryomyces hansenii... [more]
RL24_ASHGO2.197e-2648.3160S ribosomal protein L24 OS=Ashbya gossypii GN=RP... [more]
RL24_DICDI4.896e-2648.3160S ribosomal protein L24 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC08001B12SK PhyRootSw1 Citrus sinensis cDNA clone C08001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300692 ID=CX300692; Name=CX300692; organism=Citrus sinensis; type=EST; length=404bp
CTCGTGCCGAATTCGGCACGAGGCAACACCATCAGAAACCATGGTTCTCA
AGACTGAACTTTGCAAATTCAGCGGTGCCAAGATATACCCTGGTAAGGGT
ATCAGATTTATTCGTTCAGACTCTCAGGTTTTCCTCTTTGCCAATTCTAA
ATGCAAGAGGTACTTCCACAACCGATTGAAGCCATCGAAGCTTACATGGA
CAGCCATGTACAGGAAACAGCACAAGAAGGACATTGCTGCTGAGGCAGTT
AAGAAGAAGCGTCGTGCCACTAAGAAGCCCTATTCAAGATCTATAGTTGG
TGCCACCTTGGAAGTTATCCAGAAGAGAAGAACTGAGAAGCCAGAAGTCC
GAGATGCTGCACGGGAGGCTGCACTTCGTGAAATTAAGGAGAGGATCAAG
AAGA
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