EG358193

Overview
NameEG358193
Unique NameEG358193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358193 vs. ExPASy Swiss-Prot
Match: PAL1_ARATH (Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 1.734e-23
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 1
Query:  247 YRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 414
            YR VREELGT  LTGEKVTSPGE+FDKVFTA+C+GKIIDPM+ECL EWNGAP+PIC
Sbjct:  670 YRFVREELGTELLTGEKVTSPGEEFDKVFTAICEGKIIDPMMECLNEWNGAPIPIC 725          
BLAST of EG358193 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.862e-23
Identity = 45/56 (80.36%), Postives = 54/56 (96.43%), Query Frame = 1
Query:  247 YRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 414
            Y++VRE++GT+ LTGEKV SPGE+FDKVFTAMC+GK+IDPMLECL+EWNGAPLPIC
Sbjct:  665 YKIVREDIGTSLLTGEKVRSPGEEFDKVFTAMCEGKLIDPMLECLKEWNGAPLPIC 720          
BLAST of EG358193 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.604e-23
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  247 YRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 414
            Y+ VREELGT  LTGEKV SPGE+FDKVFTAMCQGKIIDPMLECL EWNG+PLPIC
Sbjct:  660 YKFVREELGTVLLTGEKVQSPGEEFDKVFTAMCQGKIIDPMLECLGEWNGSPLPIC 715          
BLAST of EG358193 vs. ExPASy Swiss-Prot
Match: PAL2_ARATH (Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.124e-22
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 1
Query:  247 YRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 414
            YR VREELGT  LTGEKV SPGE+FDKVFTAMC+GK+IDP+++CL+EWNGAP+PIC
Sbjct:  662 YRFVREELGTKLLTGEKVVSPGEEFDKVFTAMCEGKLIDPLMDCLKEWNGAPIPIC 717          
BLAST of EG358193 vs. ExPASy Swiss-Prot
Match: PAL1_PHAVU (Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 2.503e-22
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  247 YRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 414
            Y+ VREELGT  LTGEKV SPGE+FDK+FTA+CQGKIIDP+LECL EWNGAPLPIC
Sbjct:  451 YKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 506          
BLAST of EG358193 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.284e-22
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 1
Query:  247 YRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 414
            Y+ VREEL T+ LTGEKV SPGE+FDKVF+A+CQGK+IDP+LECLREWNGAP+PIC
Sbjct:  565 YKFVREELKTSLLTGEKVRSPGEEFDKVFSAICQGKVIDPLLECLREWNGAPIPIC 620          
BLAST of EG358193 vs. ExPASy Swiss-Prot
Match: PAL2_PHAVU (Phenylalanine ammonia-lyase class 2 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.284e-22
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  247 YRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 414
            Y+ VREELGT+ LTGEKV SPGE+ DKVF+AMCQGKIIDP+LECL EWNGAPLPIC
Sbjct:  657 YKFVREELGTSLLTGEKVISPGEECDKVFSAMCQGKIIDPLLECLGEWNGAPLPIC 712          
BLAST of EG358193 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.513e-22
Identity = 44/56 (78.57%), Postives = 52/56 (92.86%), Query Frame = 1
Query:  247 YRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 414
            Y+ VREELGT+ LTGEKV SPGE+FDKVFTA+C GK+IDP+LECL+EW+GAPLPIC
Sbjct:  655 YKFVREELGTSLLTGEKVKSPGEEFDKVFTAICAGKLIDPLLECLKEWDGAPLPIC 710          
BLAST of EG358193 vs. ExPASy Swiss-Prot
Match: PAL1_POPKI (Phenylalanine ammonia-lyase G1 OS=Populus kitakamiensis GN=PALG1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.513e-22
Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 1
Query:  247 YRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 414
            Y+ VREELGT+ LTGEKV SPGE FDKVFTA+C GK++DP+LECL+EWNGAPLPIC
Sbjct:  627 YKFVREELGTSLLTGEKVKSPGEDFDKVFTAICAGKLMDPLLECLKEWNGAPLPIC 682          
BLAST of EG358193 vs. ExPASy Swiss-Prot
Match: PALY_VITVI (Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.242e-21
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 1
Query:  247 YRLVREELGTNFLTGEKVTSPGEKFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 414
            Y+ VREELGT  LTGEKV SPGE FDKVFTAMC+GKIIDP+L+CL  WNGAPLPIC
Sbjct:  361 YKFVREELGTGLLTGEKVRSPGEDFDKVFTAMCEGKIIDPLLDCLSAWNGAPLPIC 416          
The following BLAST results are available for this feature:
BLAST of EG358193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PAL1_ARATH1.734e-2383.93Phenylalanine ammonia-lyase 1 OS=Arabidopsis thali... [more]
PALY_CITLI3.862e-2380.36Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PALY_POPTR8.604e-2385.71Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PAL2_ARATH1.124e-2278.57Phenylalanine ammonia-lyase 2 OS=Arabidopsis thali... [more]
PAL1_PHAVU2.503e-2282.14Phenylalanine ammonia-lyase class 1 (Fragment) OS=... [more]
PALY_PERAE7.284e-2278.57Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PAL2_PHAVU7.284e-2282.14Phenylalanine ammonia-lyase class 2 OS=Phaseolus v... [more]
PAL2_POPKI9.513e-2278.57Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PAL1_POPKI9.513e-2278.57Phenylalanine ammonia-lyase G1 OS=Populus kitakami... [more]
PALY_VITVI1.242e-2180.36Phenylalanine ammonia-lyase (Fragment) OS=Vitis vi... [more]

Pages

back to top
Properties
Property NameValue
Genbank description4g10 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl004g10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358193 ID=EG358193; Name=EG358193; organism=Citrus sinensis; type=EST; length=464bp
ACCCTCTGCTGTAAAGGCCCCACCTACGGAGCCTGCATTTCATCTGGGAA
TTTCTTCAAGTGTTCCTAATAGTTTGCCCTCTCTGGTGAGAATGGAATCA
TTTGGCACCCAATCTGCCCTTGCTGAGCCTGGTCACTTACAGGGTCAGTT
AAAATTCGATATCCGAAGCACACCTAGTTTTCATCCTCATTCACTTCCAG
AGTGCCATGATGGTTTAAATAAGGGTGTTCGCTGCAATTCTTCGGGTACA
GGTTAGTGAGGGAGGAGCTCGGGACTAATTTTCTGACTGGGGAAAAAGTT
ACATCGCCCGGCGAGAAATTTGACAAAGTGTTTACAGCAATGTGCCAGGG
CAAGATCATTGATCCAATGCTGGAATGTCTCAGGGAATGGAATGGCGCCC
CTCTTCCAATATGCTAGTTGTTTTATTCTTAAGAATTCATTGAATTGCCG
ATGTGACTAAATGG
back to top