CK939292

Overview
NameCK939292
Unique NameCK939292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939292 vs. ExPASy Swiss-Prot
Match: APR1_ARATH (5'-adenylylsulfate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=APR1 PE=1 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 1.674e-21
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 2
Query:  419 AEVAEKVEGEE--DFEQFAKELENASPLEIMDRALEKFGNDIA 541
            AE+AE+VE  E  DFE+ AK+LENASPLEIMD+ALEK+GNDIA
Sbjct:   79 AEIAEEVEVVEIEDFEELAKKLENASPLEIMDKALEKYGNDIA 121          

HSP 2 Score: 61.6178 bits (148), Expect = 1.674e-21
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:  160 VSQIGSFRLVDRAHVASTSLS---QRRSLVRPLNAEPKRNDSVVPLAATL 300
            VSQIGS RL+DR HVA  SL+   +R S V+PLNAEPK  DS++PLAAT+
Sbjct:   28 VSQIGSLRLLDRVHVAPVSLNLSGKRSSSVKPLNAEPKTKDSMIPLAATM 77          
BLAST of CK939292 vs. ExPASy Swiss-Prot
Match: APR3_ARATH (5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 3.476e-13
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 2
Query:  419 AEVAEKVE--GEEDFEQFAKELENASPLEIMDRALEKFGNDIA 541
            +EV EK++    EDFE+ AK LENASPLEIMD+ALEKFGNDIA
Sbjct:   71 SEVTEKLDVVEVEDFEELAKRLENASPLEIMDKALEKFGNDIA 113          

HSP 2 Score: 35.4242 bits (80), Expect = 3.476e-13
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 1
Query:  160 VSQIGSFRLVDRAHV--ASTSLSQRRSLVRPLNAEPKRNDSVVPLAAT 297
            V++IGS RL++R +V  AS SLS +RS V+ LN +    +S+V    T
Sbjct:   27 VTKIGSLRLLNRTNVSAASLSLSGKRSSVKALNVQSITKESIVASEVT 74          
BLAST of CK939292 vs. ExPASy Swiss-Prot
Match: APR2_ARATH (5'-adenylylsulfate reductase 2, chloroplastic OS=Arabidopsis thaliana GN=APR2 PE=2 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 2.166e-12
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 2
Query:  422 EVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIA 541
            EV EK    EDFEQ AK+LE+ASPLEIMD+ALE+FG+ IA
Sbjct:   74 EVEEKGGEVEDFEQLAKKLEDASPLEIMDKALERFGDQIA 113          

HSP 2 Score: 37.3502 bits (85), Expect = 2.166e-12
Identity = 25/49 (51.02%), Postives = 30/49 (61.22%), Query Frame = 1
Query:  166 QIGSFRLVDRAHVASTSLSQRRSLVRPLNAEP-KRNDSVVPLAATLATP 309
            QI S RL DR H     LSQRR  ++PLNAE   R++S V  A+TL  P
Sbjct:   30 QICSIRLSDRTH-----LSQRRYSMKPLNAESHSRSESWVTRASTLIAP 73          
The following BLAST results are available for this feature:
BLAST of CK939292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
APR1_ARATH1.674e-2174.425'-adenylylsulfate reductase 1, chloroplastic OS=A... [more]
APR3_ARATH3.476e-1372.095'-adenylylsulfate reductase 3, chloroplastic OS=A... [more]
APR2_ARATH2.166e-1270.005'-adenylylsulfate reductase 2, chloroplastic OS=A... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004752_E07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939292 ID=CK939292; Name=CK939292; organism=Citrus sinensis; type=EST; length=689bp
TTCAAGCTCCAGTTTTGCTCTTTCTAGTTCTTCAAATGACATTAAAGGTA
TGATTTCTGTATCTGTATTTTAATTTTAAACAAAATTAGAAGAAGAAAAA
AAAGAAAAGAAAATGAGCTTGTTTTTCTTTTATTCAATTAAATTTTGTTT
GTGATTTCAGTTTCACAAATCGGTTCTTTCCGGTTAGTGGACCGGGCACA
CGTGGCTTCCACGAGCCTCTCTCAACGACGTAGTTTAGTAAGACCGTTGA
ATGCCGAGCCAAAACGAAACGATTCCGTGGTGCCTCTGGCAGCAACTCTC
GCTACCCCTGGTAATTTGAACTTTTTTTCTTAAAAAAATTAATAAATAAA
AATGGTGATATAATTTTGCTAGAAATACAAACAATGATTTATTGTTGACG
TGATTGATTGTTGATTTTGCAGAAGTGGCGGAGAAAGTAGAAGGGGAGGA
GGATTTTGAGCAATTTGCTAAGGAGCTTGAAAATGCGTCACCTCTTGAAA
TCATGGATAGAGCTCTTGAAAAGTTTGGAAATGACATAGCGATTGCTTTC
AGGTAGTTTTTATTTTTACTTATTTATATTTTGCCCTTTTTTTGTATAAT
TTGATTGTGTCGATAATAGAAGGAAATCTTTTCACTTTGCTTTTATGATA
TGTTTTGGGCANGGGTCCGGCTATGTTGAACTGCCATTT
back to top