CK939278

Overview
NameCK939278
Unique NameCK939278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: PREA_SYNY3 (Prenyl transferase OS=Synechocystis sp. (strain PCC 6803) GN=preA PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.288e-27
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 1
Query:  487 ISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLY 813
            IS  ++F  V +DL+ L  NLK +VGA +P+L +AAE +F AGGKR+RPA+V LVSRAT   +  +ELT +HRRLAEI EMIHTASL+HDDV+DE+D+RR   TV+ L+
Sbjct:    2 ISTTSLFAPVDQDLRLLTDNLKRLVGARHPILGAAAEHLFEAGGKRVRPAIVLLVSRAT---LLDQELTARHRRLAEITEMIHTASLVHDDVVDEADLRRNVPTVNSLF 107          
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: PREA_CYAPA (Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.145e-26
Identity = 59/109 (54.13%), Postives = 81/109 (74.31%), Query Frame = 1
Query:  490 SLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYG 816
            S+ NI   V  +L  L +NLK +VG+ +P+L +A+E +F A GKR RPA+V L+S+AT E    + +T++HRRLAEI E+IHTASL+HDD+LDESD+RRG  TVH  +G
Sbjct:    3 SITNILAPVENELDLLTKNLKKLVGSGHPILSAASEHLFSASGKRPRPAIVLLISKATMEN---EIITSRHRRLAEITEIIHTASLVHDDILDESDVRRGIPTVHSDFG 108          
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: PREA_PORYE (Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.333e-24
Identity = 54/105 (51.43%), Postives = 81/105 (77.14%), Query Frame = 1
Query:  499 NIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLY 813
            ++F  V ++L +L +NLK++ G  +P+L +AA+ +F AGGKR+RPALVFLV++AT+E    +++ T  +RLAEI E+IHTASL+HDD++DE   RRG +TVH L+
Sbjct:    6 SLFYPVEQELCSLEKNLKAVAGTRHPILYAAAKHLFDAGGKRVRPALVFLVAKATSE---KQDINTGQKRLAEITEIIHTASLVHDDIIDECTTRRGVKTVHNLF 107          
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: PREA_PORPU (Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.741e-24
Identity = 53/106 (50.00%), Postives = 81/106 (76.42%), Query Frame = 1
Query:  496 ANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLY 813
            +++F  + ++L ++  NLKS+ G  +P+L +AA+ +F AGGKRLRPA+V LV+++T+E    +E+    RRLAEI E+IHTASL+HDDV+DE   RRG++TVH+L+
Sbjct:    5 SSLFHPIEKELYSVEHNLKSVAGTRHPILYAAAKHLFEAGGKRLRPAIVLLVAKSTSE---QQEIKPGQRRLAEITEIIHTASLVHDDVIDECSTRRGEKTVHKLF 107          
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: PREA_CYACA (Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 43/101 (42.57%), Postives = 70/101 (69.31%), Query Frame = 1
Query:  514 VAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYG 816
            V EDL  + Q L  ++   NP+L +AA+ +     K++RPA+V LV++A  +    K++ T  +RLAE+ E+IHTA+L+HDDV+DES +RRG ++V++ +G
Sbjct:   11 VKEDLLNIEQTLNKLIKVNNPILSAAAKHLLIVESKKIRPAIVLLVAKAIDKN---KKIKTSQQRLAEVTEIIHTATLLHDDVVDESIIRRGTKSVNKTFG 108          
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: ISPB_HAEIN (Octaprenyl-diphosphate synthase OS=Haemophilus influenzae GN=ispB PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  472 KSRSPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYG 816
            K +  +S+  I ++   D+Q +NQN+ + + ++ P++      I   GGKR+RP +  L +R+     G   +T      A  +E IHTASL+HDDV+DESDMRRG+ T +  +G
Sbjct:    2 KKQDLMSIDEIQKLADPDMQKVNQNILAQLNSDVPLIGQLGFYIVQGGGKRIRPLIAVLAARSLG-FEGSNSITC-----ATFVEFIHTASLLHDDVVDESDMRRGRATANAEFG 110          
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: ISPB_SHIFL (Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.964e-13
Identity = 41/110 (37.27%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  487 ISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYG 816
            ++L  I E+ A+D+  +N  +   + ++  ++      I   GGKR+RP +  L +RA    VG +     H  +A +IE IHTA+L+HDDV+DESDMRRG+ T +  +G
Sbjct:    1 MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGGKRIRPMIAVLAARA----VGYEG--NAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFG 104          
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: ISPB_ECOLI (Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12) GN=ispB PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.964e-13
Identity = 41/110 (37.27%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  487 ISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYG 816
            ++L  I E+ A+D+  +N  +   + ++  ++      I   GGKR+RP +  L +RA    VG +     H  +A +IE IHTA+L+HDDV+DESDMRRG+ T +  +G
Sbjct:    1 MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGGKRIRPMIAVLAARA----VGYEG--NAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFG 104          
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: DPS1_DICDI (Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.529e-12
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  502 IFEVVAEDLQTLNQNLKSIVG---------------AENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLY 813
            IF+VV  DL  +  N+   +                  +P+L S +   F   GKR+RP +V L+S+A +  V   +L     +LAEI+EMIHTASL+HDDV+DE+  RR   +++  Y
Sbjct:  129 IFKVVENDLSNMTHNIMKTITDGVSANSTYSPSPSKKTHPILSSISSYYFELKGKRIRPTIVLLLSKALSSTVHGSQL-----KLAEIVEMIHTASLVHDDVIDEASTRRDVISINHSY 242          
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: DPS1_MOUSE (Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.406e-12
Identity = 42/147 (28.57%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  379 NLARCRVYSTKTPETLLNVGQIPPAVLNLKEKSRSPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRA-TAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYG 816
            +L +  + ++ T  ++    Q  PA+ + ++ ++S    ++ F++   DL+ L ++++  +      L   +E  F   GK  RP +V L++RA        +E+    R +A + EMIHTA+L+HDDV+D++  RRG+ TV++++G
Sbjct:   49 SLMKILMSASPTMHSISQFHQRTPAMCSCRQ-TQSGEKYSDPFKLGWRDLKGLYEDIRKELHISTRELKDMSEYYFDGKGKAFRPIIVVLMARACNIHHNNAREMQASQRSIALVAEMIHTATLVHDDVIDDASSRRGKHTVNKIWG 194          
The following BLAST results are available for this feature:
BLAST of CK939278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PREA_SYNY31.288e-2758.72Prenyl transferase OS=Synechocystis sp. (strain PC... [more]
PREA_CYAPA4.145e-2654.13Prenyl transferase OS=Cyanophora paradoxa GN=preA ... [more]
PREA_PORYE1.333e-2451.43Prenyl transferase OS=Porphyra yezoensis GN=preA P... [more]
PREA_PORPU1.741e-2450.00Prenyl transferase OS=Porphyra purpurea GN=preA PE... [more]
PREA_CYACA4.593e-1742.57Prenyl transferase OS=Cyanidium caldarium GN=preA ... [more]
ISPB_HAEIN2.359e-1336.52Octaprenyl-diphosphate synthase OS=Haemophilus inf... [more]
ISPB_SHIFL8.964e-1337.27Octaprenyl-diphosphate synthase OS=Shigella flexne... [more]
ISPB_ECOLI8.964e-1337.27Octaprenyl-diphosphate synthase OS=Escherichia col... [more]
DPS1_DICDI1.529e-1236.13Decaprenyl-diphosphate synthase OS=Dictyostelium d... [more]
DPS1_MOUSE3.406e-1228.57Decaprenyl-diphosphate synthase subunit 1 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_H08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939278 ID=CK939278; Name=CK939278; organism=Citrus sinensis; type=EST; length=816bp
GGGGAAAAACAAAAGCACCCAGTTGAGCTCTTTAGCTTCTTTTCAAATTT
TCTTCCATACCCAGTTGGTGATTTGTTCTGTGTTTGTTTCAAAATTTTGT
TTTTATGGGGAGATTGGACTGAGTTCTTTATCTGGATACTTGATTTGAGT
CTAAGTTTGGTGCTTTCTTTGTTTTTTCTTTTTGGGTATTTAGTGCTGAG
AATGATGTCAATGACAAGCCACAATCTTGATTTTGGAAGAAGTGTACTTG
ATTTGGTGGCTTGTGGGTGTTCTAGTAGCGCCTCTATTCATAGGAGTTCA
GTGAGAAAAATTGCAATGACAGGTTCTAGGAAGAGTAACAGGGACTGTGG
TGCTAGGAGATTGGTTTGTTGTAGGCAAAACCTTGCTCGTTGTCGAGTTT
ATTCCACCAAAACACCTGAGACTCTACTTAATGTTGGCCAAATTCCTCCA
GCGGTTTTGAATTTGAAGGAAAAGTCAAGAAGCCCAATTTCTCTGGCAAA
TATTTTTGAAGTGGTTGCTGAGGACCTTCAGACACTTAATCAGAATCTCA
AGTCTATTGTTGGTGCGGAAAACCCAGTTTTAATGTCTGCGGCCGAGCAG
ATCTTTGGTGCTGGTGGTAAGAGGCTGAGACCAGCTTTGGTGTTCCTAGT
GTCAAGGGCTACAGCAGAATTAGTTGGGTTGAAAGAACTGACCACAAAGC
ATCGTCGTTTAGCTGAAATCATTGAGATGATTCATACTGCAAGTTTGATA
CATGATGATGTGTTAGATGAAAGTGACATGCGAAGAGGTCAGGAAACTGT
TCACCAATTGTATGGC
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