EY649579 | Citrus Genome Database

Overview


Name	EY649579
Unique Name	EY649579
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	827

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7838	contig	Csv1_Contig7838:430..1253.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.582e-98
Identity = 115/130 (88.46%), Postives = 118/130 (90.77%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 139.428 bits (350), Expect = 5.582e-98
Identity = 71/92 (77.17%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 5.582e-98
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 5.582e-98
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.582e-98
Identity = 115/130 (88.46%), Postives = 118/130 (90.77%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 139.428 bits (350), Expect = 5.582e-98
Identity = 71/92 (77.17%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 5.582e-98
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 5.582e-98
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA1_PEA (Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.582e-98
Identity = 115/130 (88.46%), Postives = 118/130 (90.77%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 139.428 bits (350), Expect = 5.582e-98
Identity = 71/92 (77.17%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 5.582e-98
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 5.582e-98
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.604e-97
Identity = 114/130 (87.69%), Postives = 118/130 (90.77%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVA+I T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVASIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 139.428 bits (350), Expect = 1.604e-97
Identity = 71/92 (77.17%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 1.604e-97
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

HSP 4 Score: 21.9422 bits (45), Expect = 1.604e-97
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.773e-97
Identity = 114/130 (87.69%), Postives = 117/130 (90.00%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDV EF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 139.428 bits (350), Expect = 3.773e-97
Identity = 71/92 (77.17%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 3.773e-97
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA2_ORYSJ (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica GN=TUBA PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.773e-97
Identity = 114/130 (87.69%), Postives = 117/130 (90.00%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDV EF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 139.428 bits (350), Expect = 3.773e-97
Identity = 71/92 (77.17%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 3.773e-97
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA1_ELEIN (Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.773e-97
Identity = 114/130 (87.69%), Postives = 117/130 (90.00%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDV EF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 139.428 bits (350), Expect = 3.773e-97
Identity = 71/92 (77.17%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 3.773e-97
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 4.917e-97
Identity = 114/130 (87.69%), Postives = 117/130 (90.00%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDV EF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 139.043 bits (349), Expect = 4.917e-97
Identity = 71/92 (77.17%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAILLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 4.917e-97
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA1_MAIZE (Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 4.917e-97
Identity = 114/130 (87.69%), Postives = 117/130 (90.00%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDV EF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ +DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP 359

HSP 2 Score: 139.043 bits (349), Expect = 4.917e-97
Identity = 71/92 (77.17%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L +NAV             ERL  DYGKKSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDVA LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAILLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.335 bits (59), Expect = 4.917e-97
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCF 82
            ++LADNCTGLQG   F
Sbjct:  123 RKLADNCTGLQGFLVF 138

[Close]

BLAST of EY649579 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 7.811e-97
Identity = 115/130 (88.46%), Postives = 117/130 (90.00%), Query Frame = 2

Query:  359 LGSQVIPSLTASLKPDGALNVDVTEFPTNLVPYPRIHFMLSSYAPVISADKAYHEQLSGAEITNSAFEPSSMMAKCDPRHGKYMARCLMYRGDVEPNDVNAAVATINTNRLIQLLDWCPTGFKCGINYQP 748
            L SQVI SLTASL+ DGALNVDVTEF TNLVPYPRIHFMLSSYAPVISA+KAYHEQLS AEITNSAFEPSSMMAKCDPRHGKYMA CLMYRGDV P DVNAAVATI T R IQ  DWCPTGFKCGINYQP
Sbjct:  230 LVSQVISSLTASLRFDGALNVDVTEFRTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFADWCPTGFKCGINYQP 359

HSP 2 Score: 136.346 bits (342), Expect = 7.811e-97
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 1

Query:   76 LFYNAVXXXXXXXXXXXXXERLPADYGKKSKLGFTVYPSPQVSTSVAEPYNSVLSTHSLLEHTDVAALLDSEAIYDICWRSLDIERPTYTNL 351
            L ++AV             ERL  DYGKKSKLGFTVYPSPQVSTSV EPYNSVLSTHSLLEHTDV+ LLD+EAIYDIC RSLDIERPTYTNL
Sbjct:  136 LVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNL 227

HSP 3 Score: 27.7202 bits (60), Expect = 7.811e-97
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2

Query:   35 QELADNCTGLQGIPCFT 85
            ++LADNCTGLQG   F+
Sbjct:  123 RKLADNCTGLQGFLVFS 139

HSP 4 Score: 21.9422 bits (45), Expect = 7.811e-97
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 1

Query:  748 PTVVPRGDLA 777
            PTVVP GDLA
Sbjct:  360 PTVVPGGDLA 369

The following BLAST results are available for this feature:

BLAST of EY649579 vs. ExPASy Swiss-Prot

BLAST of EY649579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 399


Match Name	E-value	Identity	Description
TBA_PRUDU	5.582e-98	88.46	Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ...	[more]
TBA4_GOSHI	5.582e-98	88.46	Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S...	[more]
TBA1_PEA	5.582e-98	88.46	Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE...	[more]
TBA2_GOSHI	1.604e-97	87.69	Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S...	[more]
TBA3_HORVU	3.773e-97	87.69	Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 ...	[more]
TBA2_ORYSJ	3.773e-97	87.69	Tubulin alpha-2 chain OS=Oryza sativa subsp. japon...	[more]
TBA1_ELEIN	3.773e-97	87.69	Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 ...	[more]
TBA2_MAIZE	4.917e-97	87.69	Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV...	[more]
TBA1_MAIZE	4.917e-97	87.69	Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV...	[more]
TBA1_GOSHI	7.811e-97	88.46	Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 S...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-001-B11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY649579 ID=EY649579; Name=EY649579; organism=Citrus sinensis; type=EST; length=827bp
CCACGCGTCCGGTTGATCTCTGCCTTGACCGCATCAGGAGCTGGCTGATA
ACTGCACTGGTCTCCAGGGCATTCCTTGTTTTACAATGCTGTTGGTGGAG
GAACTGGCTCTGGTCTTGGGTCTCTTCTTCTGGAGAGGTTGCCTGCTGAC
TATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCTACCCATCTCCTCAGGT
CTCCACTTCTGTTGCTGAGCCTTACAACAGTGTCCTCTCAACCCACTCCC
TGTTGGAGCATACTGATGTGGCTGCTCTTCTCGACAGTGAGGCCATTTAT
GACATCTGCTGGCGCTCCCTTGACATTGAACGTCCTACCTATACTAACCT
CATATATACTTGGTTCTCAGGTCATTCCTTCATTGACTGCCTCACTGAAG
CCTGATGGCGCTTTGAATGTGGATGTGACTGAATTCCCAACCAACTTGGT
CCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTCATCT
CAGCTGATAAAGCCTACCATGAACAACTCTCAGGTGCTGAGATCACCAAC
AGTGCCTTCGAGCCCTCATCTATGATGGCCAAATGTGATCCTCGGCATGG
CAAGTACATGGCTCGCTGCCTCATGTACCGAGGTGATGTTGAGCCCAACG
ATGTCAATGCAGCTGTTGCTACCATCAACACCAACCGTCTCATCCAATTA
CTGGACTGGTGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGCCCCA
ACTGTGGTTCCTCGTGGAGACCTTGCCACGTGCAAAGGGCTGATTGCATG
ATCTACACTCCCCCATGTGCATGAGTG