CK938363

Overview
NameCK938363
Unique NameCK938363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2216 contig Csv1_Contig2216:1089..1683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.267e-20
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEKC 159
            GSE+V  YEDKDGDWMLVGDVPWEMF+++CKRLRIMK ++AIGLAPRA+EKC
Sbjct:  222 GSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKC 273          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.266e-20
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEKC 159
            GS++V  YEDKDGDWMLVGDVPWEMF+D+CKR+RIMK ++AIGLAPRA+EKC
Sbjct:  181 GSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKC 232          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.117e-19
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:   10 EFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEKC 159
            E+V  YEDKDGDWMLVGDVPWEMF+++CKRLRIMK ++AIGLAPRAVEKC
Sbjct:  182 EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKC 231          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.765e-19
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:   10 EFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEKC 159
            ++V +YEDKDGDWMLVGDVPW MF+DTCKRLR+MK +DAIGLAPRA+EKC
Sbjct:  176 DYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKC 225          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.612e-19
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEKC 159
            GSE+V+ YEDKD DWMLVGDVPWEMFI +CK+LRIMKS++AIGLAPR +EKC
Sbjct:  250 GSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKC 301          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.792e-18
Identity = 39/50 (78.00%), Postives = 48/50 (96.00%), Query Frame = 1
Query:    7 SEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEK 156
            SE+V +YEDKDGDWMLVGDVPWEMF+++CKRLRIMK ++A+GLAPRA+EK
Sbjct:  188 SEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK 237          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.792e-18
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1
Query:   10 EFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEK 156
            E+VL YEDKDGDWMLVGDVPWEMF D+C+RLRIMK +DAIGLAPRA EK
Sbjct:  210 EYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAIGLAPRAGEK 258          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.341e-18
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEK 156
            GSEFVL YEDKDGDWMLVGDVPWE+F +TC++L+IMK +D+IGLAP AVEK
Sbjct:  264 GSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEK 314          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.341e-18
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 1
Query:   10 EFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEK 156
            E+VL YEDKDGDWMLVGDVPWEMF ++C+RLRIMK +DAIGLAPRAV+K
Sbjct:  204 EYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDK 252          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.811e-18
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    7 SEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEK 156
            SE+V +YEDKDGDWMLVGDVPW MF+++CKRLRIMK ++AIGLAPRA+EK
Sbjct:  174 SEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEK 223          
The following BLAST results are available for this feature:
BLAST of CK938363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
IAA30_ORYSJ3.267e-2080.77Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA16_ARATH4.266e-2078.85Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA11_ORYSJ2.117e-1982.00Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
IAA17_ARATH2.765e-1980.00Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA27_ARATH3.612e-1978.85Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA7_ARATH1.792e-1878.00Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA3_ORYSJ1.792e-1883.67Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA8_ARATH2.341e-1878.43Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA17_ORYSJ2.341e-1881.63Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA14_ARATH6.811e-1878.00Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_G09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938363 ID=CK938363; Name=CK938363; organism=Citrus sinensis; type=EST; length=596bp
GGGGGCTCAGAATTCGTTCTCGCTTATGAAGACAAAGATGGGGATTGGAT
GCTTGTGGGTGATGTCCCCTGGGAGATGTTTATTGATACATGCAAGAGGT
TGAGGATTATGAAGAGCACTGATGCCATTGGCCTAGCGCCAAGGGCTGTG
GAGAAATGCAGGAACAGAAACTAGCTACTGTTCAACATATTGTTGGTATT
CATCCAGCAATTCTCGGTGATAAAATTCTGGCAGATGACAGAAAATAACA
TGATCCAAATTCATGCTTGGGGGTGTTGGAGGGCATCTGCTTTTCTGTGT
TACCACATTACTACGTTTACTGTGATGGATTTTCATGTTCTGTAAGCTGT
GATTGTTGTCTTGTTATTAAAATTATAAAACTCTCGTAGACCTTGTATTT
TGGAGTGAACCTCTGAGATTGGATCTCCTCAAGGAGTTCTGACAAGTTCC
TGTTCCCAACAGGTACCTTAGTTTGTAAAGTGCGTTGTTTGTTGAACTAC
TTTGTTATGCGTGCTTGTTTGGTGAAAAAAAAAAAGACATCATCCATGTC
ATTAATTCGTAACCCTGTCTCNNANAAAAAAAAAAAAAAAAAAAAA
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