FC921779

Overview
NameFC921779
Unique NameFC921779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length220
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1574 contig Csv1_Contig1574:1484..1703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921779 vs. ExPASy Swiss-Prot
Match: AROF_TOBAC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.387e-25
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = -3
Query:   51 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 218
            LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR+
Sbjct:  479 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRL 534          
BLAST of FC921779 vs. ExPASy Swiss-Prot
Match: AROG_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.091e-25
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = -3
Query:   51 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 218
            LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLEL+FIIAERLRKRR+
Sbjct:  478 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKRRL 533          
BLAST of FC921779 vs. ExPASy Swiss-Prot
Match: AROF_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum tuberosum GN=SHKA PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.091e-25
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = -3
Query:   51 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 218
            LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLEL+FIIAERLRKRR+
Sbjct:  478 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKRRL 533          
BLAST of FC921779 vs. ExPASy Swiss-Prot
Match: AROF_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=DHS1 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.885e-25
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = -3
Query:   54 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR 218
            LEMTGQNVTECIGGSRTVT+DDLSSRYHTHCDPRLNASQSLELAFI+AERLRKRR
Sbjct:  464 LEMTGQNVTECIGGSRTVTYDDLSSRYHTHCDPRLNASQSLELAFIVAERLRKRR 518          
BLAST of FC921779 vs. ExPASy Swiss-Prot
Match: AROG_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.174e-24
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = -3
Query:   51 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 218
            LEMTGQNVTECIGGSRTVTFDDLS RYHTHCDPRLNASQSLELAFIIAERLR+RR+
Sbjct:  469 LEMTGQNVTECIGGSRTVTFDDLSDRYHTHCDPRLNASQSLELAFIIAERLRRRRM 524          
BLAST of FC921779 vs. ExPASy Swiss-Prot
Match: AROG_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=DHS2 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.003e-24
Identity = 51/56 (91.07%), Postives = 56/56 (100.00%), Query Frame = -3
Query:   51 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 218
            LEMTGQNVTEC+GGSRT+T++DLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR+
Sbjct:  441 LEMTGQNVTECVGGSRTITYNDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRL 496          
BLAST of FC921779 vs. ExPASy Swiss-Prot
Match: AROG_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.612e-24
Identity = 50/56 (89.29%), Postives = 55/56 (98.21%), Query Frame = -3
Query:   51 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 218
            LEMTGQNVTECIGGSRTVT+DDL SRYHTHCDPRLNASQSLEL+FI+AERLR+RR+
Sbjct:  451 LEMTGQNVTECIGGSRTVTYDDLGSRYHTHCDPRLNASQSLELSFIVAERLRRRRM 506          
BLAST of FC921779 vs. ExPASy Swiss-Prot
Match: AROF_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.612e-24
Identity = 50/56 (89.29%), Postives = 55/56 (98.21%), Query Frame = -3
Query:   51 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 218
            LEMTGQNVTECIGGSRTVT+DDL SRYHTHCDPRLNASQSLEL+FI+AERLR+RR+
Sbjct:  451 LEMTGQNVTECIGGSRTVTYDDLGSRYHTHCDPRLNASQSLELSFIVAERLRRRRM 506          
BLAST of FC921779 vs. ExPASy Swiss-Prot
Match: AROF_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS1 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.612e-24
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = -3
Query:   51 LEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 218
            LEMTGQNVTECIGGSRTVTFDDL  RYHTHCDPRLNASQSLEL+FIIAERLR++RI
Sbjct:  483 LEMTGQNVTECIGGSRTVTFDDLGDRYHTHCDPRLNASQSLELSFIIAERLRRKRI 538          
BLAST of FC921779 vs. ExPASy Swiss-Prot
Match: AROF_CATRO (Probable phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplastic OS=Catharanthus roseus GN=DHS1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.816e-17
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = -3
Query:   60 TECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK 194
            TEC+GGSRT+T+DD  +RYHTHCDPRLNASQSLELAFIIAERLRK
Sbjct:  439 TECVGGSRTITYDDRQTRYHTHCDPRLNASQSLELAFIIAERLRK 483          
The following BLAST results are available for this feature:
BLAST of FC921779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AROF_TOBAC1.387e-2598.21Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_SOLLC3.091e-2596.43Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_SOLTU3.091e-2596.43Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_ARATH6.885e-2596.36Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_ORYSJ1.174e-2494.64Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROG_ARATH2.003e-2491.07Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROG_SOLTU7.612e-2489.29Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_SOLLC7.612e-2489.29Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_ORYSJ7.612e-2491.07Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_CATRO1.816e-1786.67Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]

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Properties
Property NameValue
Genbank descriptionC06052C03T7 RindPdigS Citrus sinensis cDNA clone C06052C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921779 ID=FC921779; Name=FC921779; organism=Citrus sinensis; type=EST; length=220bp
CTCCGGCCATTCTACAGGAGAGAAGAAGAGGCAAGAGGTTGCTGTGAGCT
AATCCTCCTCTTTCTGAGCCGCTCGGCAATGATGAAGGCAAGCTCAAGTG
ACTGTGAAGCATTGAGCCTAGGGTCACAGTGGGTGTGGTAGCGTGAACTC
AAGTCGTCGAATGTCACTGTTCTTGACCCACCGATGCACTCTGTCACATT
CTGGCCTGTCATCTCCAAAT
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