Genetic diversity and relationships within Citrus and related genera based on sequence related amplified polymorphism markers (SRAPs)

Publication Overview
TitleGenetic diversity and relationships within Citrus and related genera based on sequence related amplified polymorphism markers (SRAPs)
AuthorsUzun A, Yesiloglu T, Aka-Kacar Y, Tuzcu O, Gulsen O
TypeJournal Article
Journal NameScientia horticulturae
Volume121
Issue3
Year2009
Page(s)306-312
CitationUzun A, Yesiloglu T, Aka-Kacar Y, Tuzcu O, Gulsen O. Genetic diversity and relationships within Citrus and related genera based on sequence related amplified polymorphism markers (SRAPs). Scientia horticulturae. 2009; 121(3):306-312.

Abstract

Sequence related amplified polymorphism (SRAP) markers were used to detect molecular marker polmorphisms among 86 citrus and their relatives in Aurantioidea. Twenty-one SRAP primer combinations produced a total of 376 polymorphic fragments with an average of 17.9 per primer combination and an average polymorphism information content (PIC) of 0.86. The unweighted pair group method arithmetic average (UPGMA) analysis demonstrated that the accessions had a similarity range from 0.28 to 1.00 with a mean of 0.64. The subtribe Clauseninae (tribe Clauseneae) separated from the subtribes of the tribe Citreae. The subtribe Balsamocitrinae (tribe Citreae) was the most distant from the others. In the Citrinae, 'primitive citrus fruit trees' and 'near citrus fruit trees' groups did not clearly separate from each other but all genera in these groups were distinct. On the other hand, subgenus Papeda and subgenus Citrus were not separated clearly in the dendrogram. C. maxima, C. medica and C. reticulata separated into three distinct clusters in agreement with three 'true basic species' thesis. Similarity-based analyses supported the theory of few ancestral species in Aurantioidea.
Stocks
This publication contains information about 58 stocks:
Stock NameUniquenameType
AmbersweetAmbersweetcultivar
AustralianAustraliancultivar
Buddhas handBuddhas handcultivar
C-32C-32breeding_research_material
C-35C-35breeding_research_material
CalamondinCalamondincultivar
CarrizoCarrizobreeding_research_material
CelebesCelebescultivar
ChironjaChironjacultivar
Citremon 1449Citremon 1449cultivar
CitronCitroncultivar
Citrumelo 1452Citrumelo 1452cultivar
CocktailCocktailcultivar
CommuneCommunecultivar
CuracaoCuracaocultivar
EncoreEncorewild_unimproved
Frost DancyFrost Dancycultivar
GlennGlenncultivar
Gou Tou ChengGou Tou Chengcultivar
GranitoGranitocultivar
Ichang papedaIchang papedacultivar
Improved ‘Meyer’Improved ‘Meyer’cultivar
InterdonatoInterdonatowild_unimproved
KalpiKalpicultivar
Kao PanneKao Pannewild_unimproved

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Features
This publication contains information about 27 features:
Feature NameUniquenameType
Em1Em1genetic_marker
Em10Em10genetic_marker
Em11Em11genetic_marker
Em12Em12genetic_marker
Em13Em13genetic_marker
Em14Em14genetic_marker
Em15Em15genetic_marker
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Em2Em2genetic_marker
Em3Em3genetic_marker
Em4Em4genetic_marker
Em5Em5genetic_marker
Em6Em6genetic_marker
Em7Em7genetic_marker
Em9Em9genetic_marker
Me1Me1genetic_marker
Me10Me10genetic_marker
Me11Me11genetic_marker
Me12Me12genetic_marker
Me2Me2genetic_marker
Me3Me3genetic_marker
Me4Me4genetic_marker
Me5Me5genetic_marker
Me6Me6genetic_marker
Me7Me7genetic_marker

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Properties
Additional details for this publication include:
Property NameValue
Publication TypeJournal Article
Publication Date2009
Published Location|||
Language Abbreng
Publication Model[electronic resource].
URLhttp://dx.doi.org/10.1016/j.scienta.2009.02.018
KeywordsCitrus, citrus fruits, wild relatives, genetic variation, genetic polymorphism, genetic markers, nucleotide sequences, Rosaceae, molecular systematics, plant taxonomy, sequence related amplified polymorphism, molecular sequence data
Cross References
This publication is also available in the following databases:
DatabaseAccession
AGL: USDA National Agricultural LibraryAGL:4205143