CK937424

Overview
NameCK937424
Unique NameCK937424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:146..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937424 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.842e-23
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 2
Query:   62 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVDVMDVQAAETEGNCKCGPTCACVNCTCG 259
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++   VMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMTV--VMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CK937424 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.460e-19
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   62 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVDVMDVQAAETEGNCKCGPTCACVNCTC 256
            MSD CGNCDCAD SQCVKKG+S   D VETD S++  V VM V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIEDV-VMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CK937424 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.108e-18
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 2
Query:   71 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVDVMDVQAAETEGNCKCGPTCACVNCTCGS 262
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V ++  +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEV-IVAAEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CK937424 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 2
Query:   62 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVDVMDVQAAETEGNCKCGPTCACVNCTC 256
            MS  C NCDC+D SQC KKG S+    VET+   + TV +MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTV-IMDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CK937424 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.395e-16
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   62 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVDVMDVQAAETEGNCKCGPTCACVNCTCG 259
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CK937424 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.790e-16
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 2
Query:   62 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVDVMDVQAAETEGNCKCGPTCACVNCTCG 259
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK937424 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.790e-16
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 2
Query:   62 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVDVMDVQAAETEGNCKCGPTCACVNCTCG 259
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK937424 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 2
Query:   62 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVDVMDVQAAETEGNCKCGPTCACVNCTCG 259
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFEMAE--EVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CK937424 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.041e-13
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 2
Query:   62 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVDVMDVQAAETEGNCKCGPTCACVNCTCG 259
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFEMAE--EVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CK937424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA2.842e-2368.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE9.460e-1967.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC2.108e-1859.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV1.510e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO4.395e-1659.09Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ9.790e-1654.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI9.790e-1654.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ5.372e-1450.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI2.041e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004780_G09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937424 ID=CK937424; Name=CK937424; organism=Citrus sinensis; type=EST; length=566bp
GGGGTACAATAAAGAGCCCTCTATTTCCAGTTTTAAATTCCAAGTTCTAA
GCTCAATCAACATGTCGGACACCTGCGGCAACTGCGACTGCGCTGACAGG
AGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGCTGACTTCGTCGAGAC
TGACTTGAGCTTTGTCAGCACCGTTGATGTCATGGACGTTCAGGCTGCTG
AGACTGAAGGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTGAACTGC
ACTTGTGGTAGTCACTAATAAGCAAACACATGCAGCAAAAAATAAGAAGC
TGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAATAATGTAAGGGTGATT
AAAAAAAAAGAAAAATTCTCTACTTCGTTTTTATGATGGTCTACTACTAG
TGTGTGGAGTGATGTGCGTGTTGTGTCACCCATCACTCGTAATGTTTTGT
GTTTCCTTCTTCATAATCATGTAATATATGGCCATGGCCATGACCGTGGC
CTTGTGTGGTTTAATTTTAATGTATTATTGTTAGTAGAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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