FC921774

Overview
NameFC921774
Unique NameFC921774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length337
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921774 vs. ExPASy Swiss-Prot
Match: TF2H3_DICDI (General transcription factor IIH subunit 3 OS=Dictyostelium discoideum GN=gtf2h3 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.958e-19
Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = -2
Query:  100 VHHKPQQLDGLFQYLLTIFGTDLHSRNFLQPPQPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 330
            ++ KPQ+ + L QYLLT F  D  SR  L  P    VD+RASCFCHK  +D+GY+CSVCLSI+C H   CSTCG+ F
Sbjct:  268 IYLKPQKQELLSQYLLTTFLLDTLSRKSLAYPTLKSVDYRASCFCHKRIVDIGYVCSVCLSIFCGHSSSCSTCGTKF 344          
BLAST of FC921774 vs. ExPASy Swiss-Prot
Match: TF2H3_HUMAN (General transcription factor IIH subunit 3 OS=Homo sapiens GN=GTF2H3 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.096e-17
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = -2
Query:  100 KPQQLDGLFQYLLTIFGTDLHSRNFLQPPQPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 321
            K  Q+  L QYLL +F  D   R+ L  P PV VD+RA+CFCH+N I++GY+CSVCLSI+C     C+TC + F
Sbjct:  216 KVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289          
BLAST of FC921774 vs. ExPASy Swiss-Prot
Match: TF2H3_BOVIN (General transcription factor IIH subunit 3 OS=Bos taurus GN=GTF2H3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.096e-17
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = -2
Query:  100 KPQQLDGLFQYLLTIFGTDLHSRNFLQPPQPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 321
            K  Q+  L QYLL +F  D   R+ L  P PV VD+RA+CFCH+N I++GY+CSVCLSI+C     C+TC + F
Sbjct:  217 KVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290          
BLAST of FC921774 vs. ExPASy Swiss-Prot
Match: TF2H3_RAT (General transcription factor IIH subunit 3 OS=Rattus norvegicus GN=Gtf2h3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.514e-16
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = -2
Query:  100 KPQQLDGLFQYLLTIFGTDLHSRNFLQPPQPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 321
            K  Q+  L QYLL +F  D   R+ L  P P+ VD+RA+CFCH++ I++GY+CSVCLSI+C     C+TC + F
Sbjct:  217 KVPQMPSLLQYLLWVFLPDQDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290          
BLAST of FC921774 vs. ExPASy Swiss-Prot
Match: TF2H3_MOUSE (General transcription factor IIH subunit 3 OS=Mus musculus GN=Gtf2h3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.514e-16
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = -2
Query:  100 KPQQLDGLFQYLLTIFGTDLHSRNFLQPPQPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 321
            K  Q+  L QYLL +F  D   R+ L  P P+ VD+RA+CFCH++ I++GY+CSVCLSI+C     C+TC + F
Sbjct:  217 KVPQMPSLLQYLLWVFLPDQDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290          
BLAST of FC921774 vs. ExPASy Swiss-Prot
Match: TFB4_SCHPO (RNA polymerase II transcription factor B subunit 4 OS=Schizosaccharomyces pombe GN=tfb4 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.822e-15
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = -2
Query:  100 VHHKPQQLDGLFQYLLTIFGTDLHSRNFLQPPQPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 330
            ++ K     GL QYL+     D + R  L  P    VDFRA+CFCHK  +D+G++CSVCLSI+C+    CSTC + F
Sbjct:  210 IYLKVDNPKGLLQYLMMSLFPDQNLRKHLNTPNQANVDFRATCFCHKKVLDIGFVCSVCLSIFCEPRVHCSTCHTKF 286          
The following BLAST results are available for this feature:
BLAST of FC921774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TF2H3_DICDI1.958e-1955.84General transcription factor IIH subunit 3 OS=Dict... [more]
TF2H3_HUMAN9.096e-1751.35General transcription factor IIH subunit 3 OS=Homo... [more]
TF2H3_BOVIN9.096e-1751.35General transcription factor IIH subunit 3 OS=Bos ... [more]
TF2H3_RAT4.514e-1648.65General transcription factor IIH subunit 3 OS=Ratt... [more]
TF2H3_MOUSE4.514e-1648.65General transcription factor IIH subunit 3 OS=Mus ... [more]
TFB4_SCHPO3.822e-1545.45RNA polymerase II transcription factor B subunit 4... [more]
back to top
Properties
Property NameValue
Genbank descriptionC06052B10T7 RindPdigS Citrus sinensis cDNA clone C06052B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921774 ID=FC921774; Name=FC921774; organism=Citrus sinensis; type=EST; length=337bp
CCAATGCTAAATCTCAAAGCAGAATATGACTTATGCATCCGTTGTCTTTC
TCTTTCGATTAGTTGCAGAAGGCTCGTCTGATTGGGTTTGTGCCTGACCA
AATACTGACCCGCACGTTGAGCATTTCTTGAGATGCTTACAATATATGGA
CAAACACACAGAGCAAATGTAGCCCATGTCAATTGTATTTTTATGGCAGA
AACAGGATGCACGGAAATCAACACCAACAGGCTGAGGAGGTTGTAGAAAG
TTGCGGGAATGCAAATCAGTTCCAAAAATTGTCAAGAGATATTGAAAGAG
CCCATCCAATTGTTGAGGCTTATGATGTACCTCGGCC
back to top