FC921774
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921774 vs. ExPASy Swiss-Prot
Match: TF2H3_DICDI (General transcription factor IIH subunit 3 OS=Dictyostelium discoideum GN=gtf2h3 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.958e-19 Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = -2 Query: 100 VHHKPQQLDGLFQYLLTIFGTDLHSRNFLQPPQPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 330 ++ KPQ+ + L QYLLT F D SR L P VD+RASCFCHK +D+GY+CSVCLSI+C H CSTCG+ F Sbjct: 268 IYLKPQKQELLSQYLLTTFLLDTLSRKSLAYPTLKSVDYRASCFCHKRIVDIGYVCSVCLSIFCGHSSSCSTCGTKF 344
BLAST of FC921774 vs. ExPASy Swiss-Prot
Match: TF2H3_HUMAN (General transcription factor IIH subunit 3 OS=Homo sapiens GN=GTF2H3 PE=1 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 9.096e-17 Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = -2 Query: 100 KPQQLDGLFQYLLTIFGTDLHSRNFLQPPQPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 321 K Q+ L QYLL +F D R+ L P PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F Sbjct: 216 KVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
BLAST of FC921774 vs. ExPASy Swiss-Prot
Match: TF2H3_BOVIN (General transcription factor IIH subunit 3 OS=Bos taurus GN=GTF2H3 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.096e-17 Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = -2 Query: 100 KPQQLDGLFQYLLTIFGTDLHSRNFLQPPQPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 321 K Q+ L QYLL +F D R+ L P PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F Sbjct: 217 KVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
BLAST of FC921774 vs. ExPASy Swiss-Prot
Match: TF2H3_RAT (General transcription factor IIH subunit 3 OS=Rattus norvegicus GN=Gtf2h3 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.514e-16 Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = -2 Query: 100 KPQQLDGLFQYLLTIFGTDLHSRNFLQPPQPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 321 K Q+ L QYLL +F D R+ L P P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F Sbjct: 217 KVPQMPSLLQYLLWVFLPDQDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
BLAST of FC921774 vs. ExPASy Swiss-Prot
Match: TF2H3_MOUSE (General transcription factor IIH subunit 3 OS=Mus musculus GN=Gtf2h3 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.514e-16 Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = -2 Query: 100 KPQQLDGLFQYLLTIFGTDLHSRNFLQPPQPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 321 K Q+ L QYLL +F D R+ L P P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F Sbjct: 217 KVPQMPSLLQYLLWVFLPDQDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
BLAST of FC921774 vs. ExPASy Swiss-Prot
Match: TFB4_SCHPO (RNA polymerase II transcription factor B subunit 4 OS=Schizosaccharomyces pombe GN=tfb4 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.822e-15 Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = -2 Query: 100 VHHKPQQLDGLFQYLLTIFGTDLHSRNFLQPPQPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 330 ++ K GL QYL+ D + R L P VDFRA+CFCHK +D+G++CSVCLSI+C+ CSTC + F Sbjct: 210 IYLKVDNPKGLLQYLMMSLFPDQNLRKHLNTPNQANVDFRATCFCHKKVLDIGFVCSVCLSIFCEPRVHCSTCHTKF 286 The following BLAST results are available for this feature:
BLAST of FC921774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921774 ID=FC921774; Name=FC921774; organism=Citrus sinensis; type=EST; length=337bpback to top |