FC921767

Overview
NameFC921767
Unique NameFC921767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length233
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8577 contig Csv1_Contig8577:687..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921767 vs. ExPASy Swiss-Prot
Match: DET1_SOLLC (Light-mediated development protein DET1 OS=Solanum lycopersicum GN=DET1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.038e-25
Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = -1 
Query:    3 FHSW*RKVMASLPFGCQSQSPSPYLDQSLFGYEEKLIWATDRHRQSTDHPIKFISRRPPYTLKFKIKPGPEA 218
            F  + +K+MASLP  CQSQSPSPY DQSLF ++EKLI A DRHRQSTDHPIKFISRR P  LKFK+KPGPEA
Sbjct:  410 FSQFVKKMMASLPCSCQSQSPSPYFDQSLFRFDEKLISAIDRHRQSTDHPIKFISRRQPNILKFKMKPGPEA 481
[Close]
BLAST of FC921767 vs. ExPASy Swiss-Prot
Match: DET1_ARATH (Light-mediated development protein DET1 OS=Arabidopsis thaliana GN=DET1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.568e-24
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = -1 
Query:    6 AFHSW*RKVMASLPFGCQSQSPSPYLDQSLFGYEEKLIWATDRHRQSTDHPIKFISRRPPYTLKFKIKPGPE 221
            +F  + +K++ SLPF CQSQSPSPY DQSLF ++EKLI A DRHRQS+D+PIKFISRR P TLKFKIKPGPE
Sbjct:  429 SFSQFVKKMLLSLPFSCQSQSPSPYFDQSLFRFDEKLISAADRHRQSSDNPIKFISRRQPQTLKFKIKPGPE 500
The following BLAST results are available for this feature:
BLAST of FC921767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DET1_SOLLC7.038e-2575.00Light-mediated development protein DET1 OS=Solanum... [more]
DET1_ARATH1.568e-2472.22Light-mediated development protein DET1 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionC06052B03T7 RindPdigS Citrus sinensis cDNA clone C06052B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921767 ID=FC921767; Name=FC921767; organism=Citrus sinensis; type=EST; length=233bp
CCAGCTTCCGGACCTGGCTTAATCTTAAATTTAAGGGTATATGGTGGCCT
TCTAGAAATAAACTTGATGGGATGATCTGTTGATTGTCTATGTCTATCGG
TTGCCCAAATGAGCTTTTCCTCGTATCCAAAAAGTGATTGGTCCAAGTAT
GGAGAAGGACTCTGTGATTGGCAACCAAAAGGCAAAGAGGCCATCACCTT
CCTTTACCAACTGTGAAAAGCTGCCTCCCCCGC
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