CK936498

Overview
NameCK936498
Unique NameCK936498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1930 contig Csv1_Contig1930:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936498 vs. ExPASy Swiss-Prot
Match: VRN1_ARATH (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.616e-43
Identity = 85/148 (57.43%), Postives = 109/148 (73.65%), Query Frame = 3
Query:  117 MPRPYFHKLILASTIRDKRLRILENFVRNFKDDLSAAATLIVPNGMVSRVGLRRLDNKVWFYDGWQEFMERYFIRIGYFLVFRYEGNSAFNVYIFNLPSSEINYQPNALSNFEVPNHSKQYHIFAEMEDDDSEHVDQPTVNKTFNPPS 560
            MPRP+FHKLI +STI++KRLR+ + FV  FKD+LS A  L VP+G V RVGLR+ DNK+WF DGWQEF++RY IRIGY L+FRYEGNSAF+VYIFNL  SEINY    L +    NH K+  +F ++ED+D+E +   +V  +  P S
Sbjct:    1 MPRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMD-SAHNHFKRARLFEDLEDEDAEVIFPSSVYPSPLPES 147          
BLAST of CK936498 vs. ExPASy Swiss-Prot
Match: Y4158_ARATH (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.246e-19
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 3
Query:  111 PKMPRPYFHKLILASTIRDKRLRILENFVRNFKDDLSAAATLIVPNGMVSRVGLRRLDNKVWFYDGWQEFMERYFIRIGYFLVFRYEGNSAFNVYIFNLPSSEINYQPNAL 443
            P+ P   F KL+L ST++DK +RI   FV+     LS   TL+ P G    + L+R+  ++WF++GW EF E + I  G+FL+F Y+ NS+F V IFN  + E NY  +A+
Sbjct:   23 PESPVKKFFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPLDAV 133          
BLAST of CK936498 vs. ExPASy Swiss-Prot
Match: Y3896_ARATH (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana GN=At3g18960 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 3
Query:  111 PKMPRPYFHKLILASTIRDKRLRILENFVRNFKDDLSAAATLIVPNGMVSRVGLRRLDNKVWFYDGWQEFMERYFIRIGYFLVFRYEGNSAFNVYIFNLPSSEINYQPNAL 443
            P+ P   F KL+L ST++DK ++I   FV+     LS   TL  P G    + L+R+  ++WF++GW EF E + I  G+FL+F Y+ NS+F V IFN+ + E  Y  +A+
Sbjct:   23 PESPVKKFFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPLDAV 133          
BLAST of CK936498 vs. ExPASy Swiss-Prot
Match: Y1475_ARATH (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.684e-16
Identity = 52/139 (37.41%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  132 FHKLILASTIRDKRLRILENFVRNFKDDLSAAATLIVPNGMVSRVGLRRLDNKVWFYDGWQEFMERYFIRIGYFLVFRYEGNSAFNVYIFNLPSSEINYQPNAL--SNFEVPNHSKQYHIFAEMEDDDSEHVDQPTVNK 542
            F K+IL S I +K +++   FVR F   L+   TL  P G    + ++R+ ++VWF  GW EF E + +  G+FL F YEG+S F V IF++ +SEI Y  +    +  EV +  +Q     E  DDD E VD   + K
Sbjct:   34 FIKIILLSRIIEKMMKVPARFVR-FGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPLDDTDDNREEVMDDDEQGFTGFESSDDDGEVVDMDELLK 171          
The following BLAST results are available for this feature:
BLAST of CK936498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
VRN1_ARATH1.616e-4357.43B3 domain-containing transcription factor VRN1 OS=... [more]
Y4158_ARATH1.246e-1941.44B3 domain-containing protein At4g01580 OS=Arabidop... [more]
Y3896_ARATH3.069e-1839.64B3 domain-containing protein At3g18960 OS=Arabidop... [more]
Y1475_ARATH1.684e-1637.41B3 domain-containing protein At1g49475 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004521_F03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936498 ID=CK936498; Name=CK936498; organism=Citrus sinensis; type=EST; length=688bp
GGGGGAAGAGGAGAGAAAGAGAGCAAGAGAAACAGCAGATCTGAAAGCTC
ATGTCTTAACAATCATAATCATAATCGTCAAATCATCATTATATTTTCTT
TTGATTGTTACCCAAAATGCCACGACCTTATTTTCACAAGCTTATTCTCG
CCTCCACCATTCGTGACAAGAGACTGAGGATTCTAGAAAACTTTGTTAGG
AATTTCAAGGATGACCTTTCTGCAGCTGCTACACTTATTGTTCCGAATGG
TATGGTTTCACGTGTGGGATTAAGGAGACTTGACAACAAAGTATGGTTTT
ATGATGGGTGGCAGGAATTTATGGAACGTTACTTTATCCGTATTGGGTAT
TTTTTGGTCTTCAGATATGAAGGGAATTCAGCCTTTAATGTTTATATTTT
TAATTTGCCTTCTTCTGAGATAAACTATCAACCTAATGCCCTCAGTAATT
TTGAAGTACCCAATCATAGCAAACAATACCATATATTTGCAGAAATGGAA
GATGATGACTCTGAACATGTAGATCAACCAACAGTCAACAAGACTTTCAA
TCCTCCGTCATTTCAGAATTTGCTTAACAGCTCTAAACTTAGCAACAGCA
TAAATGGTGCTGGTGAAGCAAACTTGCAGCGATTAAAAGTGAAATTGTAT
TCACAAGATGGAGAAACACCAAAGCTTAAAAAACCTGG
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