CX675012

Overview
NameCX675012
Unique NameCX675012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675012_ssr386 microsatellite CX675012_ssr386:386..397. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10372 contig Csv1_Contig10372:61..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2M_ARATH (Hydroxyacylglutathione hydrolase 1, mitochondrial OS=Arabidopsis thaliana GN=GLX2-1 PE=2 SV=2)

HSP 1 Score: 370.548 bits (950), Expect = 5.936e-102
Identity = 183/253 (72.33%), Postives = 201/253 (79.45%), Query Frame = 2
Query:   47 TCSRGQSGLCVVPGPRQLCLRKGLLYGFMRLLSMPFKTLHLASRSLRVAEFCSISNMSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYA 805
            +CSR    LCV PG RQLCLRK LLYG M LLSMP KTL  A ++L++  FCSISNM SSL+IELVPC +DNYAYLLHD DTGTVGVVDPSEA PVI+ALSRKN NLTYI              ELK RYGAKVIGS VDKDRIPGIDI+L D DKWMFAGHEV ++DTPGHT+GHISFYFPGSA +FTGD ++SLSCG L EGTP QM SSLQKI+SLPDDTN+YCG E T  N KFALS+EP NE LQSYA
Sbjct:   18 SCSRIGGQLCVWPGLRQLCLRKSLLYGVMWLLSMPLKTLRGARKTLKITHFCSISNMPSSLKIELVPCSKDNYAYLLHDEDTGTVGVVDPSEAAPVIEALSRKNWNLTYILNTHHHDDHIGGNAELKERYGAKVIGSAVDKDRIPGIDILLKDSDKWMFAGHEVRILDTPGHTQGHISFYFPGSATIFTGDLIYSLSCGTLSEGTPEQMLSSLQKIVSLPDDTNIYCGRENTAGNLKFALSVEPKNETLQSYA 270          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2N_ARATH (Hydroxyacylglutathione hydrolase 2, mitochondrial OS=Arabidopsis thaliana GN=At2g31350 PE=1 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 2.111e-99
Identity = 180/255 (70.59%), Postives = 205/255 (80.39%), Query Frame = 2
Query:   44 FTCSRGQSGLCVVPGPRQLCLRKGLLYGFMRLLSMPFKTLHLASRSLRVAEFCSISNMSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAA 808
            F CSR  S     P  RQL +RK L+   M+L+S P +TL  A +S+RV++FCS+SN+SS LQIELVPCL+DNYAY+LHD DTGTVGVVDPSEA P+ID+L R  RNLTYI              ELK RYGAKVIGS +DKDRIPGID+ L DGDKWMFAGHEVHV+DTPGHT+GHIS YFPGS A+FTGDT+FSLSCGKLFEGTP QM +SLQKI SLPDDT++YCGHEYTLSNSKFALS+EPNNE LQSYAA
Sbjct:   14 FRCSRKLSSQ---PCVRQLNIRKSLVCRVMKLVSSPLRTLRGAGKSIRVSKFCSVSNVSS-LQIELVPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRYGAKVIGSAMDKDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLPDDTSIYCGHEYTLSNSKFALSLEPNNEVLQSYAA 264          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_PELUB (Hydroxyacylglutathione hydrolase OS=Pelagibacter ubique GN=gloB PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.696e-48
Identity = 95/190 (50.00%), Postives = 122/190 (64.21%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQ 796
            ++I+++ CL+DNY+YL+ D       V+DPSEA PVI  L  KN +L YI              ELK +YGA VIG   DKDRIP IDI++ D D W     +  +   PGHT GHI FYF    +VFTGDTLFSL CGK+FEGT  QM++SL KI +LP+ T +YCGHEYT  NSKF ++ + +NE L+
Sbjct:    1 MEIQIIRCLQDNYSYLIVDKAKNIACVIDPSEAKPVIKYLEDKNIHLKYILNTHHHYDHVGGNKELKEKYGASVIGYKGDKDRIPEIDILVGDQDIWHEENFQAKIFHIPGHTLGHICFYFYNEESVFTGDTLFSLGCGKIFEGTYSQMYNSLMKIKALPEKTKIYCGHEYTKQNSKFCIAHDQDNENLK 190          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_OCHA4 (Hydroxyacylglutathione hydrolase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=gloB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.875e-47
Identity = 93/201 (46.27%), Postives = 127/201 (63.18%), Query Frame = 2
Query:  206 ISNMSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAA 808
            +++++  L+IE   C  DNY  L+HD  +     +D  +A  +  AL R+   L +I               LKA+YG  +IG   ++ +IPGID  + DGD++ F    V VI TPGHT G +S+Y P + AVFTGDTLF+L CG+LFEGTP  MF SLQK+++LP DT VYCGHEYT SN++FAL+I+P N AL+  AA
Sbjct:    1 MNSIAPRLEIEQFICRSDNYGVLIHDPQSALTASIDAPDAAAIEAALKRRGWTLDFIFTTHHHLDHVEGNEALKAKYGVSIIGPKAEETKIPGIDRTVKDGDEFTFGLFRVKVIATPGHTAGEVSYYLPDAKAVFTGDTLFALGCGRLFEGTPLTMFQSLQKLVALPGDTAVYCGHEYTESNARFALTIDPANSALKERAA 201          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_SILPO (Hydroxyacylglutathione hydrolase OS=Silicibacter pomeroyi GN=gloB PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.457e-47
Identity = 91/194 (46.91%), Postives = 125/194 (64.43%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAA 808
            L+I  VPCL DNYAYL+HD D G   +VD  EA P+   L R+  +L  +               L+ RY   VIG+  D  R+P +D+ +++GD++   G  V V+D  GHT GHI+F+ P   AVFT D+L +L CG+LFEGTP QM++SL K+ +LPDDT V  GHEYT SN++FALS++P+N AL++ AA
Sbjct:    3 LEIVTVPCLSDNYAYLIHDADAGKTALVDAPEAAPIQSELDRRGWSLDQVWLTHHHWDHVDGLAALRDRYKPTVIGAEADAHRLPPLDLAVSEGDRFDLGGAPVEVLDVSGHTVGHIAFHLPTGKAVFTADSLMALGCGRLFEGTPDQMWASLSKLAALPDDTLVCSGHEYTQSNARFALSVDPDNAALKTRAA 196          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_RHIME (Hydroxyacylglutathione hydrolase OS=Rhizobium meliloti GN=gloB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.588e-46
Identity = 87/196 (44.39%), Postives = 124/196 (63.27%), Query Frame = 2
Query:  221 SSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAA 808
            ++L+++L  C  DNY  LLHD  +G    +D  E  P++DAL R+   LT+I               LK R+G  +IG   +  +IPGID  +  GD++ FAGH V VI+TPGHT GH+ ++ P    +F  DTLF+L CG+LFEGT   M+ SL ++M+LPDDT +Y GHEYTL+N+ FA++++P N AL+  AA
Sbjct:    2 AALELDLFLCRTDNYGVLLHDRLSGATASIDAPEERPILDALERRGWQLTHILTTHHHGDHVAANASLKERFGLTIIGPKNEASKIPGIDRTVGHGDRFDFAGHPVDVIETPGHTSGHVCYHLPEDKLLFAADTLFALGCGRLFEGTADTMWQSLSRLMALPDDTAIYFGHEYTLANAHFAITVDPENSALKERAA 197          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_METCA (Hydroxyacylglutathione hydrolase OS=Methylococcus capsulatus GN=gloB PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.344e-45
Identity = 84/190 (44.21%), Postives = 123/190 (64.74%), Query Frame = 2
Query:  227 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQ 796
            L+I  +P L DNY YLLH+  +G    VDP+ A PV++AL  +   L ++              ELKA  G  V+G+  D+ RIPGID+ L DG+++        ++D PGHT GH++F+F   AA+F GDTLF+L CG+LFEG+  QM+ SL+++ +LP +T V+C HEYT +N++FA++IEP N AL+
Sbjct:    2 LEILQIPVLEDNYVYLLHEPGSGATAAVDPAVAGPVLEALDARGWRLGHVLNTHHHGDHVGGNLELKAATGCTVVGAAGDRHRIPGIDVALKDGEEFRLGSASARMLDVPGHTSGHVAFWFEDDAALFCGDTLFALGCGRLFEGSAEQMWRSLERLRALPAETKVFCAHEYTQANARFAVTIEPGNAALR 191          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_BRUSU (Hydroxyacylglutathione hydrolase OS=Brucella suis GN=gloB PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.755e-45
Identity = 88/197 (44.67%), Postives = 122/197 (61.93%), Query Frame = 2
Query:  215 MSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYA 805
            M   L+IE   C  DNY  L+HD ++     +D  +A  +  AL R+   L +I               LK ++G  +IG   +K +IPGID  +  GD++ F   +V VI TPGHT G IS+Y P +  VFTGDTLF+L CG+LFEGTP  MF SL+K+++LP DT +YCGHEYT +N++FAL+I+P+N AL+  A
Sbjct:    1 MEQRLEIEQFICRSDNYGVLIHDPESALTATIDAPDAYAIEAALERRGWTLDFIFTTHHHLDHVEGNEPLKEKFGVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLFKVKVISTPGHTAGGISYYLPDAKVVFTGDTLFALGCGRLFEGTPATMFHSLEKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERA 197          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_BRUSI (Hydroxyacylglutathione hydrolase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=gloB PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.755e-45
Identity = 88/197 (44.67%), Postives = 122/197 (61.93%), Query Frame = 2
Query:  215 MSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYA 805
            M   L+IE   C  DNY  L+HD ++     +D  +A  +  AL R+   L +I               LK ++G  +IG   +K +IPGID  +  GD++ F   +V VI TPGHT G IS+Y P +  VFTGDTLF+L CG+LFEGTP  MF SL+K+++LP DT +YCGHEYT +N++FAL+I+P+N AL+  A
Sbjct:    4 MEQRLEIEQFICRSDNYGVLIHDPESALTATIDAPDAYAIEAALERRGWTLDFIFTTHHHLDHVEGNEPLKEKFGVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLFKVKVISTPGHTAGGISYYLPDAKVVFTGDTLFALGCGRLFEGTPATMFHSLEKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERA 200          
BLAST of CX675012 vs. ExPASy Swiss-Prot
Match: GLO2_BRUO2 (Hydroxyacylglutathione hydrolase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=gloB PE=3 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.755e-45
Identity = 88/197 (44.67%), Postives = 122/197 (61.93%), Query Frame = 2
Query:  215 MSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYA 805
            M   L+IE   C  DNY  L+HD ++     +D  +A  +  AL R+   L +I               LK ++G  +IG   +K +IPGID  +  GD++ F   +V VI TPGHT G IS+Y P +  VFTGDTLF+L CG+LFEGTP  MF SL+K+++LP DT +YCGHEYT +N++FAL+I+P+N AL+  A
Sbjct:    1 MEQRLEIEQFICRSDNYGVLIHDPESALTATIDAPDAYAIEAALERRGWTLDFIFTTHHHLDHVEGNEPLKEKFGVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLFKVKVISTPGHTAGGISYYLPDAKVVFTGDTLFALGCGRLFEGTPATMFHSLEKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERA 197          
The following BLAST results are available for this feature:
BLAST of CX675012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
GLO2M_ARATH5.936e-10272.33Hydroxyacylglutathione hydrolase 1, mitochondrial ... [more]
GLO2N_ARATH2.111e-9970.59Hydroxyacylglutathione hydrolase 2, mitochondrial ... [more]
GLO2_PELUB1.696e-4850.00Hydroxyacylglutathione hydrolase OS=Pelagibacter u... [more]
GLO2_OCHA41.875e-4746.27Hydroxyacylglutathione hydrolase OS=Ochrobactrum a... [more]
GLO2_SILPO5.457e-4746.91Hydroxyacylglutathione hydrolase OS=Silicibacter p... [more]
GLO2_RHIME1.588e-4644.39Hydroxyacylglutathione hydrolase OS=Rhizobium meli... [more]
GLO2_METCA1.344e-4544.21Hydroxyacylglutathione hydrolase OS=Methylococcus ... [more]
GLO2_BRUSU1.755e-4544.67Hydroxyacylglutathione hydrolase OS=Brucella suis ... [more]
GLO2_BRUSI1.755e-4544.67Hydroxyacylglutathione hydrolase OS=Brucella suis ... [more]
GLO2_BRUO21.755e-4544.67Hydroxyacylglutathione hydrolase OS=Brucella ovis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59B01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59B01-C1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675012 ID=CX675012; Name=CX675012; organism=Citrus sinensis; type=EST; length=808bp
GATGCAAATGATCTCCAGAGCATCATCTGCTGCCATGGCCTCCTTCACTT
GTTCAAGGGGGCAGAGTGGCCTTTGTGTTGTGCCAGGACCAAGACAACTT
TGCCTTAGAAAGGGTCTTCTGTATGGTTTCATGCGCTTATTATCAATGCC
ATTCAAGACATTGCATTTAGCAAGTCGATCTCTTAGAGTTGCTGAGTTTT
GCAGTATCTCCAACATGTCATCATCGTTGCAAATTGAGTTGGTACCGTGT
CTCAGGGACAACTATGCATATCTTTTACATGACATGGACACAGGTACTGT
TGGAGTTGTTGATCCTTCTGAAGCTGTTCCTGTGATAGATGCTTTGAGTA
GGAAAAACCGAAATCTGACTTACATTCTAAATACACATCATCATCATGAT
CACACCGGTGGTAATTTGGAGCTAAAAGCAAGGTACGGTGCAAAGGTGAT
TGGTTCAGGAGTAGACAAGGATAGGATCCCTGGCATTGATATAGTTTTGA
ATGATGGAGACAAATGGATGTTTGCTGGTCATGAGGTGCATGTGATTGAT
ACGCCTGGCCATACCCGAGGTCATATTAGCTTCTACTTTCCTGGATCAGC
GGCAGTTTTTACTGGGGACACCTTGTTCAGCTTATCCTGTGGCAAGCTTT
TTGAAGGAACCCCTGGGCAGATGTTTTCTTCCCTTCAGAAGATAATGTCT
CTGCCAGATGATACAAATGTATATTGTGGTCATGAATATACGCTGAGTAA
TTCAAAATTTGCATTGTCCATAGAACCCAACAATGAGGCCCTTCAATCAT
ATGCAGCG
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